Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0746 ATGGAGATTTTCAACCAGTCATCTGACCTGTTACCTGTCGGGTTCTCATCCTCCCCCATTTCCGAATCATCCTCAATATCCTTCGCTACTAGCAGCACCATCGCCGGCGCAGCTGGCCGCAGATTATCCCATTCCGACGAGGACGTTATACTAGCATCTAGCCGTCCCAAAAAGCGAGCAGGGAGGAGAGTATTCAAGGAGACAAGGCACCCAGTTTATAGAGGTGTTAGGAGAAGGAACAACAACAAATGGGTTTGTGAATTACGAGAACCGAACAAGAAGACTCGGATTTGGCTCGGGACTTATCCGACTGCTGAGATGGCGGCTCGGGCACATGACGTGGCGGCACTGGCTTTTCGGGGGAAGTTTGCTTGTCTGAATTTTGCTGATTCAGCTTGGAGTTTGCCGGTCCCCGTCTCTGGGGATGCTAAGGATATTAGGATGGCGGCTGCTAAGGCGGCAGAGGAGTTTCGGGATGAGGAATCTGGTGGCAATGATGTGGCAGCGACAGTTGTGGATGAGGGGGAAAACTCAGGTTCAGGTGATGGGCTCTATTACATGGATGAAGAGGCTGTGTTTGATATGCCAAGGTTGCTTTCCAGTATGGCAGAAGGGCTACTGCTTTCTCCACCACGTTTTAGTACGGAGGAAAGTGTATGCTTCGCTGACGTGGAATATGATGCTGACGTGTCGCTGTGGAGCTTCTCTATTTGA 714 51.12 MEIFNQSSDLLPVGFSSSPISESSSISFATSSTIAGAAGRRLSHSDEDVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALAFRGKFACLNFADSAWSLPVPVSGDAKDIRMAAAKAAEEFRDEESGGNDVAATVVDEGENSGSGDGLYYMDEEAVFDMPRLLSSMAEGLLLSPPRFSTEESVCFADVEYDADVSLWSFSI 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3787184 3787897 - Conep06aG0076900.1 Cone6ag0746 439630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0746 237 FunFam Ethylene-responsive transcription factor 2 71 130 - -
Cone6ag0746 237 CDD AP2 73 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0746 237 ProSiteProfiles AP2/ERF domain profile. 72 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0746 237 SUPERFAMILY DNA-binding domain 72 131 IPR016177 GO:0003677(InterPro)
Cone6ag0746 237 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0746 237 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0746 237 Gene3D AP2/ERF domain 72 130 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0746 237 SMART rav1_2 72 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0746 237 Pfam AP2 domain 71 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0746 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 31 235 IPR045277 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0848 Cone-Chr5:3637109 Cone6ag0746 Cone-Chr6:3787184 9.41E-81 dispersed
Cone6ag0746 Cone-Chr6:3787184 Cone9ag0750 Cone-Chr9:3581215 3.94E-116 dispersed
Cone6ag0745 Cone-Chr6:3780101 Cone6ag0746 Cone-Chr6:3787184 2.91E-122 tandem
Cone6ag0746 Cone-Chr6:3787184 Cone6ag0747 Cone-Chr6:3789018 3.17E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46325 PF03330 DPBB_1 1.40E-23 CL0199 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0746 - - - 0.0