Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0756 ATGGCCTCTATAAGGTCGCCGAATCGATCGTCCGAAGACATCGCCAATACGACGACGCCGTTGTTAGGGACTTCAAGCGGCTCCTCCGATGAAATTAATTCCGGCCGCCGATTTGTTCAGAGGCAGAGCCTCCGTCAGGCCGCGAGGTTCCTTAGGCAAGCGAGCAGCCGGAGGATGTTGCGTGAGCCATCGATGGTAGTGAGAGAGGCTGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCCAAGCCGGTTGTGATTCTCGATATCGTTTGGAACTTCGCGTTTGTGGTTGTGGCAGCTACCGTGTTGGTTCTGAGTCACAATGAATCGCCAGATATGCCGTTGAGGCTTTGGATTGTGGGATACGCTTTACAATGTATTCTTCATATGGTGTGTGTTTGTATTGAGTACCGCCGGCGGCACCCCCGTGGTCCGGCGTTCAATTCGCTGGAAGGAGGAAATGAGGCAGGCAGGAATTCAGGTGTGCGCTCGAATGAAGACACTGGGCAGTATGTATCATTGGGACAATTGGATGAGGGCGCTAATAGCAGTGTGGCTAAGCATCTTGAATCTGGAAACACAATGTTTTCTTTTATCTGGTGGATCATTGGATTCTACTGGGTATCTGCAGGAGGTCAATCCTTAGCACTCTCCTCCCCGCAGCTCTACTGGCTATGTATAATTTTCCTTGGTTTTGATGTTTTCTTTGTCGTCTTCTGTGTTGCCCTGGCATGCATCATTGGCATAGCTGTTTGCTGTTGCCTGCCTTGTATAATTGCACTTCTATATGCTGTAGCTGATCAGGAAGGAGCATCCAAAGAAGAAATTGAACAGCTGTCAAAATATAAGTTCAGAAAAGTGGGCGATTCTGAGAAGGTTTCAAATGATGATCAAGCAGGAGGAGTAATGACTGAATGTGGTGGGAACAAGGATTCGCCCATTGAACATGTCCTCTCTCAGGATGATGCGGAATGTTGTATATGCCTTTCTGCTTATGATGATGGAGTTGAGCTAAGAGAACTACCTTGTGGTCACCATTTTCATTGCACTTGTGTTGACAAGTGGCTATACATCAATGCTACCTGTCCTCTCTGCAAGTACAACATTTTAAAGAGCAGCAACCATGGCCAAGAGGAAGTTTAA 1155 48.05 MASIRSPNRSSEDIANTTTPLLGTSSGSSDEINSGRRFVQRQSLRQAARFLRQASSRRMLREPSMVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSHNESPDMPLRLWIVGYALQCILHMVCVCIEYRRRHPRGPAFNSLEGGNEAGRNSGVRSNEDTGQYVSLGQLDEGANSSVAKHLESGNTMFSFIWWIIGFYWVSAGGQSLALSSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEEIEQLSKYKFRKVGDSEKVSNDDQAGGVMTECGGNKDSPIEHVLSQDDAECCICLSAYDDGVELRELPCGHHFHCTCVDKWLYINATCPLCKYNILKSSNHGQEEV 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3844159 3846703 + Conep06aG0077900.1 Cone6ag0756 439640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0756 384 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Cone6ag0756 384 SMART ring_2 329 369 IPR001841 -
Cone6ag0756 384 MobiDBLite consensus disorder prediction 1 33 - -
Cone6ag0756 384 FunFam E3 ubiquitin-protein ligase At1g12760 315 380 - -
Cone6ag0756 384 SUPERFAMILY RING/U-box 319 376 - -
Cone6ag0756 384 PANTHER TARGET OF ERK KINASE MPK-1 44 374 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone6ag0756 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 379 IPR013083 -
Cone6ag0756 384 CDD RING-H2_RNF6-like 328 370 - -
Cone6ag0756 384 Pfam Ring finger domain 328 370 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0728 Cone-Chr13:7016575 Cone6ag0756 Cone-Chr6:3844159 4.06E-115 dispersed
Cone13ag0954 Cone-Chr13:8175197 Cone6ag0756 Cone-Chr6:3844159 8.24E-12 dispersed
Cone19ag0943 Cone-Chr19:7221323 Cone6ag0756 Cone-Chr6:3844159 4.33E-12 dispersed
Cone2ag0338 Cone-Chr2:1787368 Cone6ag0756 Cone-Chr6:3844159 2.07E-38 dispersed
Cone4ag1828 Cone-Chr4:13199765 Cone6ag0756 Cone-Chr6:3844159 1.21E-39 dispersed
Cone6ag0756 Cone-Chr6:3844159 Cone7ag1732 Cone-Chr7:11469243 5.10E-40 dispersed
Cone11ag0409 Cone-Chr11:2027383 Cone6ag0756 Cone-Chr6:3844159 1.38E-25 wgd
Cone18ag1101 Cone-Chr18:8039895 Cone6ag0756 Cone-Chr6:3844159 3.98E-151 wgd
Cone6ag0756 Cone-Chr6:3844159 Cone9ag0760 Cone-Chr9:3637166 5.65E-258 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0756 - - - 0.0