Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0769 ATGTCGTTTAGCGGGACCCAACAAAAGTGCAATGCTTGCGATAAGACCGTTCATTTCGTCGACGTCTTGTCGGCCGATGGGGTCGTTTATCATAAGACATGCTTCAAATGCAGCCATTGCAATAGTGTTCTTGCTATGAGTAGCTATTCTTCAATGGATGGAGTCCTTTACTGCAAGCCTCACTTTGAGCAGCTTTTCAAGGAAACTGGAAGCTACTCAAAGAAATTCCAATCATCTTTAAAGGCACCAAATGGACTGGCTAGGGCTCCTAGCAAGCTCTCCTCCATGTTCTCTGGAACACAAGACAAATGTTCTGTCTGCAACAAAACCGCCTATCCTCTCGAAAAGCTGAGTGTAGAGGGAGAAAACTATCATAAATCATGCTTTAGATGTGCTCATGGGAATTGCTTTCTTACCGCCTCAAACTATGCTGCTTTGGATGGGTTTCTTTATTGCAAGCCCCACTTTGCTCAGTTGTTTAAGGAGAAGGGAAGTTATAGTCATCTTATCAAGACCACTTCTATGAGGAAAAATGTGGTACAAGTACCTGACCAGAAATCCGAGGTCGAACAAGTTGCGGTCTCCAAAACCGAACAAAAAGGTGAAGAAGCTGCCAGACCAGAATCAGAACCCGAACAAGACTCAGCATGCACACAAGAGCAATCGTAA 669 44.25 MSFSGTQQKCNACDKTVHFVDVLSADGVVYHKTCFKCSHCNSVLAMSSYSSMDGVLYCKPHFEQLFKETGSYSKKFQSSLKAPNGLARAPSKLSSMFSGTQDKCSVCNKTAYPLEKLSVEGENYHKSCFRCAHGNCFLTASNYAALDGFLYCKPHFAQLFKEKGSYSHLIKTTSMRKNVVQVPDQKSEVEQVAVSKTEQKGEEAARPESEPEQDSACTQEQS 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3917373 3918400 + Conep06aG0079200.1 Cone6ag0769 439653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0769 222 CDD LIM1_SF3 6 68 - -
Cone6ag0769 222 MobiDBLite consensus disorder prediction 181 222 - -
Cone6ag0769 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Cone6ag0769 222 Gene3D Cysteine Rich Protein 101 168 - -
Cone6ag0769 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Cone6ag0769 222 SMART lim_4 9 61 IPR001781 -
Cone6ag0769 222 SMART lim_4 103 155 IPR001781 -
Cone6ag0769 222 FunFam LIM domain and actin-binding 1 4 74 - -
Cone6ag0769 222 PANTHER OS06G0237300 PROTEIN 2 214 - GO:0005886(PANTHER)|GO:0015629(PANTHER)|GO:0051015(PANTHER)|GO:0051017(PANTHER)
Cone6ag0769 222 FunFam LIM domain and actin-binding 1 98 168 - -
Cone6ag0769 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Cone6ag0769 222 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Cone6ag0769 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Cone6ag0769 222 Gene3D Cysteine Rich Protein 5 100 - -
Cone6ag0769 222 MobiDBLite consensus disorder prediction 191 210 - -
Cone6ag0769 222 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Cone6ag0769 222 Pfam LIM domain 104 160 IPR001781 -
Cone6ag0769 222 Pfam LIM domain 10 66 IPR001781 -
Cone6ag0769 222 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0769 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0344 Cone-Chr14:1595418 Cone6ag0769 Cone-Chr6:3917373 5.30E-65 wgd
Cone18ag1093 Cone-Chr18:8005570 Cone6ag0769 Cone-Chr6:3917373 4.32E-67 wgd
Cone6ag0769 Cone-Chr6:3917373 Cone9ag0764 Cone-Chr9:3663674 4.85E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g362 . . . . . . . . Cmo06g01119 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0769 . . . . . . . . . . . . . . . . Cma06g01093 . Car06g00928 . Cpe08g00525 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029867 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46329 PF04603 Mog1 3.80E-38 CL0619 Cone TF