Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0774 ATGGATGGGTCAGCTTCATACTACATACATAGGGACGGGTTTGGTGGGTCCCATCCCAGCCCACATCCGGTTGGATTTCATACCCCACCACCGGAGTTCCAGTCATTTTCTAACCCCATTGCTCCGGTTCAGCCAAATATCCCGGTTAGCTCAGTAGGGTCGTTATTTCCCGGAGGCATTGATATTGGTGTGGGCCCTACAGTTCCTTCCAGTGTTTCTGTGAAGAAGAAACGAGGGAGGCCCCGAAAATATGCTCCAGATGGGTCCGTTACGTTGGGCTTATCAACAAAGAAATCGGATGGTTTTAATAATAATTCTCATGATTTGAATTCATTGACCCCCAAAAGGAATAGAGGTCGACCGCCTGGAACTGGAAGGAAACAGCGATTAGCTCTGCTTGGGTATAATTATCTTTTGATAGGTGACTGGATGAACAATTCGGAAGGACAGGCATTTGCACCACATGTCATGCGCATTGGAAGAGGAGAGGACATTGTGTCAAAAGTACTGTCATTTTCACAACAGAGGCCAAGAGCGGTTTGCATATTGTCGGGCTCTGGACCAGTTTCTTCAGTTACACTACATCAACCTGCATCGACGGCCATTAGCATCAGATATGAGGGCCGTTTCCAGATATTATGCCTGTCAGGTTCTTACTTAGTTTCTGAAGAGGGCAGCCCTCAAGATCGTACTGGTGGTTTAAGCGTTTCCCTTTCTAGTCCTGATGGCCCTGTCATTGGTGGTGGTGCTGCCATCCTCATAGCATCAGGCCCTGTTCAGGTAGTAGTATGTAGTTTTCTTTATGGTAGAGGCGGATCGAAATCCTACAAAAAACCAGCGGTGGTGGATCCCAAAGCTGATGATGATAGTTTCGAAACGGAGGGCAATGATAGATTAGCAGCTACACCAAATGGTGCTCCACCAACTCAATCTTACAATCCCTCTGCAACTAGCATTTGGCCCATTTCTCGGCCAATGGAAATGAGAAACCACCATATGGGTTTTGACTTGATGCATGGATAA 1023 46.92 MDGSASYYIHRDGFGGSHPSPHPVGFHTPPPEFQSFSNPIAPVQPNIPVSSVGSLFPGGIDIGVGPTVPSSVSVKKKRGRPRKYAPDGSVTLGLSTKKSDGFNNNSHDLNSLTPKRNRGRPPGTGRKQRLALLGYNYLLIGDWMNNSEGQAFAPHVMRIGRGEDIVSKVLSFSQQRPRAVCILSGSGPVSSVTLHQPASTAISIRYEGRFQILCLSGSYLVSEEGSPQDRTGGLSVSLSSPDGPVIGGGAAILIASGPVQVVVCSFLYGRGGSKSYKKPAVVDPKADDDSFETEGNDRLAATPNGAPPTQSYNPSATSIWPISRPMEMRNHHMGFDLMHG 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3945485 3948437 - Conep06aG0079700.1 Cone6ag0774 439658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0774 340 MobiDBLite consensus disorder prediction 303 318 - -
Cone6ag0774 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 266 IPR005175 -
Cone6ag0774 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 321 IPR039605 GO:0003680(InterPro)
Cone6ag0774 340 PRINTS AT-hook-like domain signature 113 124 IPR017956 GO:0003677(InterPro)
Cone6ag0774 340 PRINTS AT-hook-like domain signature 75 85 IPR017956 GO:0003677(InterPro)
Cone6ag0774 340 Gene3D - 154 276 - -
Cone6ag0774 340 MobiDBLite consensus disorder prediction 92 112 - -
Cone6ag0774 340 MobiDBLite consensus disorder prediction 274 318 - -
Cone6ag0774 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 267 - -
Cone6ag0774 340 SMART AT_hook_2 75 87 IPR017956 GO:0003677(InterPro)
Cone6ag0774 340 SMART AT_hook_2 115 127 IPR017956 GO:0003677(InterPro)
Cone6ag0774 340 MobiDBLite consensus disorder prediction 280 295 - -
Cone6ag0774 340 MobiDBLite consensus disorder prediction 67 127 - -
Cone6ag0774 340 CDD DUF296 154 266 IPR005175 -
Cone6ag0774 340 ProSiteProfiles PPC domain profile profile. 149 294 IPR005175 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0774 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0774 Cone-Chr6:3945485 Cone8ag0357 Cone-Chr8:2067946 5.56E-55 dispersed
Cone11ag0417 Cone-Chr11:2068492 Cone6ag0774 Cone-Chr6:3945485 1.98E-61 wgd
Cone12ag0311 Cone-Chr12:1708357 Cone6ag0774 Cone-Chr6:3945485 1.12E-53 wgd
Cone14ag0350 Cone-Chr14:1623455 Cone6ag0774 Cone-Chr6:3945485 2.95E-52 wgd
Cone15ag0383 Cone-Chr15:1761417 Cone6ag0774 Cone-Chr6:3945485 2.78E-50 wgd
Cone18ag1088 Cone-Chr18:7983114 Cone6ag0774 Cone-Chr6:3945485 1.34E-61 wgd
Cone6ag0774 Cone-Chr6:3945485 Cone8ag0311 Cone-Chr8:1798718 4.29E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g329 Blo02g01107 Blo03g00211 . Bda08g00520 Bpe05g00642 Bpe07g00112 . . . . Cma02g01007 Cma15g01221 Car02g00752 Car15g01102 . . Cpe05g00713 . . . . . . . . . . . . . . Cone8ag0311 Cone12ag0311 Cone6ag0774 . . Csa05g00288 Chy09g01218 . . . . . . . Bma05g00817 Bma12g00188 . Cmo02g01022 Cmo15g01287 . . . . Cpe08g00855 . Bhi12g00246 . . . . . Lcy12g1658 Cla01g00271 Cam01g0279 Cec01g0271 Cco01g0286 Clacu01g0278 Cmu01g0266 Cre09g2242 Lsi09g00265 . . Cme09g01755
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005578 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 2 1 1 2 1 1 40