Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0775 ATGGGTTGCAAGTGTTCCAAGCTCTCATGCTGTGGGGTCCATGATGAATCTGTTCCTCAAGCTCCCAATGCCCAAACCAAAGAGAGGGATGAACTTGATTTGCCCACATTTCATGAATACACAATAGCCGAACTGAGGAGGGCTACATCTGACTTTTCTGTTGAGAGTATAGTTTCTGAACACGGGGAAAAGGCTCCCAATGTAGTTTACAAAGGGATGCTTGAGAATCAAAGGCAGATTGCTGTCAAGCGATTTAATAGATCTGCTTGGCCCGATGCTAGGCAATTTTTGGAAGAATCTAGGGCTGTTGGTCAGCTCCGGAATAATCGATTAGCAAATTTGCTGGGTTGTTGCTATGAAGGGGATGAGAGGTTACTAGTTGCAGAATATATGCCCAATGACACCTTAGCAAAGCATTTATTTCATTGGGAGACCCAACCTATGAAGTGGGCAATGCGCCTGAGGGTAGCATTATATCTTGCACAAGCTTTAGAATATTGTACCAGCAAAGGGCGTGCCCTTTATCACGATCTAAATGCTTATCGAGTTGTTTTTGATAACGATGCAAATCCCAGACTCTCATGCTTTGGTCTGATGAAGAACAGTCGAGATGGTAAAAGTTACAGTACAAATCTGGCTTTTACTCCTCCTGAATATCTCAGGACAGGAAGAGTCACTCCAGAAAGTGTCATCTACAGCTTTGGCACTCTTTTACTTGACCTTCTCAGTGGTAAACATATTCCTCCCAGTCATGCACTTGATCTTATACGGGACAGGAATATTCAGATGCTAATGGATTCTTGTCTGGAAGGACAATTTTCAAATGATGATGGGACTGAGTTGGTGCGTTTAGCTTCAAGATGCTTGCAGTATGAGGCTCGAGAGCGCCCAATTCCAAAGTCATTAATTGCTGCTTTGGTTCCTCTTCAGAAGGAAACTGAGGTTCCATCTCATGTATTGATGGGTACACCACAAAATGACACACCCTTAGCTCTGTCTCGACTTGGCGATGCTTGCTCACGAATGGATCTGACAGCCATACATGAAATCTTGGAAGATATTGGGTGCAAGGATGATGAAGGCACCGTGACAAAGCTTTCATTCCAGATGTGGACCAACCAAATGCAGGATACCTTGAATTCAAAGAAAAAGGGTGATGTTGCTTTTCGGAAGAAAGATTTTGGAGCTGCAATTGAGTGTTATACCCAGTTCATAGAGGTTGGGACCATGGTTTCACCAAATGTTTTTGCATGCCGCAGTTTATCATATCTATTGACCGATATGCCCCAGGAAGCCCTAAACGATGCAGTTCAAGTTCAAGTAATATTCAATTCCTGGCACGTTGCATCTTATTTACAAGCGGCTGCATATTTTGCACTCGGAAGAGACGATGATGCACAAGCAGCTCTCAAAAAAGGTTCTATCCTTGAAAATGAGAAATCAACTTCTCGACAGTGA 1458 43.28 MGCKCSKLSCCGVHDESVPQAPNAQTKERDELDLPTFHEYTIAELRRATSDFSVESIVSEHGEKAPNVVYKGMLENQRQIAVKRFNRSAWPDARQFLEESRAVGQLRNNRLANLLGCCYEGDERLLVAEYMPNDTLAKHLFHWETQPMKWAMRLRVALYLAQALEYCTSKGRALYHDLNAYRVVFDNDANPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLMDSCLEGQFSNDDGTELVRLASRCLQYEARERPIPKSLIAALVPLQKETEVPSHVLMGTPQNDTPLALSRLGDACSRMDLTAIHEILEDIGCKDDEGTVTKLSFQMWTNQMQDTLNSKKKGDVAFRKKDFGAAIECYTQFIEVGTMVSPNVFACRSLSYLLTDMPQEALNDAVQVQVIFNSWHVASYLQAAAYFALGRDDDAQAALKKGSILENEKSTSRQ 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3950104 3953107 + Conep06aG0079800.1 Cone6ag0775 439659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0775 485 Gene3D Tetratricopeptide repeat domain 376 485 IPR011990 GO:0005515(InterPro)
Cone6ag0775 485 FunFam probable serine/threonine-protein kinase At4g35230 27 130 - -
Cone6ag0775 485 FunFam probable serine/threonine-protein kinase At4g35230 376 485 - -
Cone6ag0775 485 SUPERFAMILY Protein kinase-like (PK-like) 34 315 IPR011009 -
Cone6ag0775 485 Pfam Protein tyrosine and serine/threonine kinase 68 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0775 485 ProSiteProfiles Protein kinase domain profile. 55 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0775 485 FunFam probable serine/threonine-protein kinase At5g41260 132 323 - -
Cone6ag0775 485 Gene3D Phosphorylase Kinase; domain 1 25 130 - -
Cone6ag0775 485 SUPERFAMILY TPR-like 380 474 IPR011990 GO:0005515(InterPro)
Cone6ag0775 485 Gene3D Transferase(Phosphotransferase) domain 1 132 324 - -
Cone6ag0775 485 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 481 IPR045845 GO:0004672(InterPro)|GO:0009742(InterPro)|GO:0009742(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0775 K14500 - - mdm:114825634 786.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0775 Cone-Chr6:3950104 Cone7ag0447 Cone-Chr7:2023055 2.93E-200 dispersed
Cone12ag0309 Cone-Chr12:1684621 Cone6ag0775 Cone-Chr6:3950104 5.51E-277 wgd
Cone14ag0351 Cone-Chr14:1627135 Cone6ag0775 Cone-Chr6:3950104 1.07E-249 wgd
Cone15ag0384 Cone-Chr15:1765324 Cone6ag0775 Cone-Chr6:3950104 1.85E-250 wgd
Cone6ag0775 Cone-Chr6:3950104 Cone8ag0308 Cone-Chr8:1777157 7.50E-277 wgd
Cone6ag0775 Cone-Chr6:3950104 Cone9ag0780 Cone-Chr9:3731247 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g326 . . . Bda08g00519 . . . . . . Cma02g01456 . Car02g01222 . . . Cpe05g00330 . . . . . . . Cla07g00767 Cam07g0823 Cec07g0881 Cco07g0858 Clacu07g0802 Cmu07g0807 Cre07g1162 Cone8ag0308 Cone12ag0309 Cone6ag0775 Cone9ag0780 . Csa05g00285 Chy09g01223 Cme07g01626 . . . . . . . . . Cmo02g01491 . . . . . . . Bhi12g00254 . . . . . . Cla01g00268 Cam01g0275 Cec01g0268 Cco01g0283 Clacu01g0275 Cmu01g0263 Cre09g2245 Lsi09g00263 Csa04g00598 Chy07g01213 Cme09g01759
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000293 4 9 3 3 3 3 5 4 4 3 4 3 5 4 4 5 3 11 5 4 4 4 4 4 4 4 4 17 7 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82928 PF01344 Kelch_1 4.40E-07 CL0186 Cone PK