Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0778 ATGGTTGAATCAATTTCTGCAACTTCTCTACTGCGTCCTGGACCTCTCTGTGGGGGAACTTTACTTAAGGACACGTCGACTAAGCGGAAGTTTTTGGATATCGCCCGCTTCCCAGTGCCGGAGTTTTCCGGTAGGAGGCTGGTTCTTTCTCGTCCATTGCCAAGATTGAAAGTTGGCTGCTCAAGACTTTCGTCTATCAAGGCCCTTGCAATGGAGCTCACTAAAGAGGCATACTCATACCAAGAGGATAAAATGCCAAAGGATTGGAATTACGAAATTGACACTAGTTTTGATCGAAAACCCGGTTTATGGCCGCCTGAAAACAAAGCTGATAATCCTACTTTACAAAACCCCTTGCTACGACAAGAACGGATGGGTTGTGGTTGGTTAGGTGCTATATTTGAATGGGAAGGAGTCTTAATCGAGGATAATAACGAGCTTGAAAAACAAGCTTGGCTGACTCTTTCTGAAGAAGAAGGAAAATCACCTCCTCATGCTTTTACCCTCAAGAGAATAGAAGGAATGAAGAATGAACAAGCAATTTCTGAAGTTCTTTGCTGGTCAAGAGATCCATCCCAGTTAAGAAGAATGGCAGCTCGGAAAGAAGAAATTTATCAAGCATTGCAAGGTGGTGTATATAGAGTCCGAGCCGGCTCGAAAGAATTTGTCAATGTCTTAATGAATTACAAGATCCCCATGGCATTGATCTCAACCCGGCCGAGAGAGAATCTAGAATCTGCAGTGGGAAGTATTGGGTTTGATGGATTCTTCAACGTGATTGTAGCTGCAGAAGATGTTCATAGGGGAAAACCCGACCCTGAAATGTTCATTTATGCAGCGCAGCTTTTGAACTTCATTCCGGAGAGATGCATTGTGTTTGGGAATTCTAATCAGACAGTGGAGGCGGCTCACGATGCTCGGATGAAGTGCGTTGCTGTGGCGAGCAAGCATCCGGTTTATGAGCTAGGGGCAGCTGATTTGGTGGTTAGGTGCTTGGATGAGTTGTCGGTTGTTGATTTAAAGAATCTTGCTGATATTGAATCAGCCGAGTTTGGGTTGGTCGAGCCGGAGACAGAGATGGAGCTGGAGGAGGAAGAAGTGGGCCAGTTGACCAGGACGGCAGTGGATGATAGTTTCTGGTGA 1143 45.58 MVESISATSLLRPGPLCGGTLLKDTSTKRKFLDIARFPVPEFSGRRLVLSRPLPRLKVGCSRLSSIKALAMELTKEAYSYQEDKMPKDWNYEIDTSFDRKPGLWPPENKADNPTLQNPLLRQERMGCGWLGAIFEWEGVLIEDNNELEKQAWLTLSEEEGKSPPHAFTLKRIEGMKNEQAISEVLCWSRDPSQLRRMAARKEEIYQALQGGVYRVRAGSKEFVNVLMNYKIPMALISTRPRENLESAVGSIGFDGFFNVIVAAEDVHRGKPDPEMFIYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPVYELGAADLVVRCLDELSVVDLKNLADIESAEFGLVEPETEMELEEEEVGQLTRTAVDDSFW 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3962970 3965065 - Conep06aG0080100.1 Cone6ag0778 439662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0778 380 Gene3D Putative phosphatase; domain 2 142 215 IPR023198 -
Cone6ag0778 380 CDD HAD_BPGM-like 193 315 - -
Cone6ag0778 380 Pfam Haloacid dehalogenase-like hydrolase 139 313 IPR041492 -
Cone6ag0778 380 SUPERFAMILY HAD-like 132 335 IPR036412 -
Cone6ag0778 380 Gene3D - 132 329 IPR023214 -
Cone6ag0778 380 NCBIfam HAD-IA family hydrolase 249 313 IPR006439 -
Cone6ag0778 380 PANTHER 5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE, CHLOROPLASTIC 1 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0778 K22912 - - csv:101210862 583.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0778 Cone-Chr6:3962970 Cone9ag0783 Cone-Chr9:3747168 3.55E-256 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g323 . . Bda06g00102 . . Bpe07g00109 . . . Cmo16g00641 . . . . . Cpe14g00503 . . . . . . . . Cla07g00768 Cam07g0825 Cec07g0883 Cco07g0860 Clacu07g0804 Cmu07g0809 Cre07g1163 . . Cone6ag0778 Cone9ag0783 . . . Cme07g01627 . . . . . . . Bma12g00076 . . . . Cma16g00591 . . . . . . . . . . . . . . . . . . . . Chy07g01214 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007776 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36