Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0782 ATGACCAGGGAGAGAGTGCCTGAAAACCTAAAGAAAAAGCTTGCTCTTGCTGTTAGAAGCATTCAATGGAGCTATGCGATTTTCTGGTCAACTTCAGCTCGACACTCTGGGGAGATGTTGGAGTGGGGTGAAGGGTACTACAATGGAGATATTAAGACAAGGAAGACAGTCCAATCCATGGAGTTGGATTATGAGCAAGCGGGTTTGCAACGGAGTGAACAATTGAGAGAACTTTATGAATCTCTCTCTGGCCATGAATCGAATAATCCACAAGCTAGAAGGCCTTCTGTTTCTTTATCCCCTGAAGATCTCACCGATACAGAGTGGTATTACTTGGTTTGCATGTCCTTCGCCTTCAACATTGGCCAAGGGTTGCCTGGAAGAACGTTGGCGAATGGTGAACCGATTTGGCTATGCAATGCTCATTTTGCAGATAGTAAAGTTTTCAGTCGCTCTCTTCTAGCTAAGAGTGCATCCATTCAGACCATAGTTTGCTTTCCGTATTTTGGAGGTGTGCTGGAATTGGGAGTGACCGAACTGGTTTTGGAGGACCCAGATCTGATTTTGCACCTTAAGACCTCTTTCTTGGAGGTTCCATGTTCCATAGGCTTCAAGAATGTCAAATGCACTGTTAAAAACATAAGAAAAGAAGACGACATCTTGTACTATGCCCTTGATCATGAGACTCTAGAGTCAGATGAGCAAGAAATAGCTTCTCTGGATAACAGTTGTAACGGGCTAGTGGGCCCATTTATGGTTGAAGGGATAAATGGAGCAGCTTCTCATGCACAAAGCTGGCAATTCATGGACGATGAGTTTAGTAACTGTGTCCTTTCTATGAACTCAAGTGACTGTATTTCTCAAACATTCATAGAGACCGAAAAGATTGCCTCCATCCCTCATGGGGAAAATATAAATGAGTATTTGCCGACATGTCAAGGAAAAAATGAAACAAAATTGCCTTCACTGGATCTTCGGAATGATGATTTACACTATCAGAGTATTCTATCTTCTCTTTTAAAGAGCTCACCCCGGTTTATTTTGGGCCCACATTCCCAAAATTGTGCCATGGAATCAAGCTTTATCAATTGGAAGAAAAAAAGAATACCAAGTTTCCAAAAACCGAAAGGCACTACCCCACAAAGTTTATTGAAAAGAATTTTGTTTGAAGTTCCTCGGATGCATTCTTGTGGCTTTCCCGCCACATCATCAGAAGCCGATGAAATTGGGGTAAATAATGCATTATCGGAAAAGAAGAGAAGAGAAAAACTTAATGAAAGATTTTTTACCCTAAGATCCCTTGTCCCTTCAATTAGAAAGGAGGACAAAGTATCAATACTAGATGAGGCAATAGACTATGTGAAAGAGCTAGAGAGGAGGGTAGAAGAGTTGGAATCTTCTAGGGAATTAACCGAAATAGAAGCAAGAACAAAGAGGAGACTGAGAGACAGAGTAGAGACTACATCCAATAGCAAGAAGAAACCATTCATGACCAAGAGGAAGTCATTTGACGTAATCAATGATTCCGAGTACGAGCTCGATCCAGTGACATCATCTTGTGATGTCTCGGGCGATGATGTAATAAATGTCTGTATAAGCAACAGGGATGTTCTGATTGAGATTAGATGTCCTTCTAGGGAGGGAGTTTTGTTGGAAATCATGGATGTAGTAAGCAATCTTCGTTTAGATTCTCATTCTGTTCGATCTTCTGTTAGTGATGGGGTTCTTTCTCTTACCATCAAATCAAAGTTTAATATGTCGTCTGTCACGTCAGCCGGGATTATCAAGCAAGCAATTGAGAGAATCGCTCGGAAGTGTTGA 1821 41.41 MTRERVPENLKKKLALAVRSIQWSYAIFWSTSARHSGEMLEWGEGYYNGDIKTRKTVQSMELDYEQAGLQRSEQLRELYESLSGHESNNPQARRPSVSLSPEDLTDTEWYYLVCMSFAFNIGQGLPGRTLANGEPIWLCNAHFADSKVFSRSLLAKSASIQTIVCFPYFGGVLELGVTELVLEDPDLILHLKTSFLEVPCSIGFKNVKCTVKNIRKEDDILYYALDHETLESDEQEIASLDNSCNGLVGPFMVEGINGAASHAQSWQFMDDEFSNCVLSMNSSDCISQTFIETEKIASIPHGENINEYLPTCQGKNETKLPSLDLRNDDLHYQSILSSLLKSSPRFILGPHSQNCAMESSFINWKKKRIPSFQKPKGTTPQSLLKRILFEVPRMHSCGFPATSSEADEIGVNNALSEKKRREKLNERFFTLRSLVPSIRKEDKVSILDEAIDYVKELERRVEELESSRELTEIEARTKRRLRDRVETTSNSKKKPFMTKRKSFDVINDSEYELDPVTSSCDVSGDDVINVCISNRDVLIEIRCPSREGVLLEIMDVVSNLRLDSHSVRSSVSDGVLSLTIKSKFNMSSVTSAGIIKQAIERIARKC 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3984304 3987756 + Conep06aG0080500.1 Cone6ag0782 439666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0782 606 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 408 457 IPR011598 GO:0046983(InterPro)
Cone6ag0782 606 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 411 475 IPR036638 GO:0046983(InterPro)
Cone6ag0782 606 Pfam Helix-loop-helix DNA-binding domain 414 458 IPR011598 GO:0046983(InterPro)
Cone6ag0782 606 Coils Coil 447 474 - -
Cone6ag0782 606 PANTHER TRANSCRIPTION FACTOR TT8 2 603 - -
Cone6ag0782 606 SMART finulus 414 463 IPR011598 GO:0046983(InterPro)
Cone6ag0782 606 Pfam Plant bHLH transcription factor, ACT-like domain 528 599 IPR054502 -
Cone6ag0782 606 Gene3D - 407 474 IPR036638 GO:0046983(InterPro)
Cone6ag0782 606 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 195 IPR025610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0782 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0909 Cone-Chr11:7482472 Cone6ag0782 Cone-Chr6:3984304 3.61E-84 dispersed
Cone17ag0544 Cone-Chr17:2752437 Cone6ag0782 Cone-Chr6:3984304 9.10E-80 dispersed
Cone18ag0655 Cone-Chr18:3426151 Cone6ag0782 Cone-Chr6:3984304 2.58E-35 dispersed
Cone20ag0871 Cone-Chr20:6328556 Cone6ag0782 Cone-Chr6:3984304 4.48E-79 dispersed
Cone4ag1001 Cone-Chr4:8644240 Cone6ag0782 Cone-Chr6:3984304 3.00E-06 dispersed
Cone6ag0782 Cone-Chr6:3984304 Cone8ag0471 Cone-Chr8:3119283 1.05E-25 dispersed
Cone11ag0423 Cone-Chr11:2115322 Cone6ag0782 Cone-Chr6:3984304 3.69E-121 wgd
Cone14ag0354 Cone-Chr14:1645099 Cone6ag0782 Cone-Chr6:3984304 1.18E-123 wgd
Cone15ag0391 Cone-Chr15:1829041 Cone6ag0782 Cone-Chr6:3984304 1.95E-100 wgd
Cone18ag1082 Cone-Chr18:7944818 Cone6ag0782 Cone-Chr6:3984304 2.60E-146 wgd
Cone6ag0782 Cone-Chr6:3984304 Cone9ag0786 Cone-Chr9:3769883 9.30E-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g317 Blo02g01111 Blo03g00217 Bda06g00113 Bda08g00368 Bpe05g00647 Bpe07g00106 . . Cmo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0782 Cone9ag0786 . . . Cme06g02703 . . Bda07g00480 . . . . Bma12g00073 . . . Cma06g01013 . Car06g00850 . Cpe08g00597 . . . . . . . . . . . . . . . . Csa03g00375 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003574 4 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 3 2 2 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46330 PF13921 Myb_DNA-bind_6 1.40E-16 CL0123 Cone TF