Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0785 ATGGAGGGTAAGGAAGAAGATGTGAAGCTTGGAGCAAATAAGTTTTCAGAGAGGCAGCCAATTGGAACATCTGCTCAGACAGACAAGGATTACAAGGAGGCACCACCTGCGCCATTGTTTGAGCCAGGTGAGCTCACTTCATGGTCGTTCTACAGAGCAGGAATTGCAGAGTTTGTAGCCACATTCTTGTTCCTCTACATCACCATCTTGACTGTGATGGGAGTTAACAAAGCTCCGTCCAAGTGTGCTTCTGTTGGTATTCAAGGCATCGCTTGGGCTTTTGGTGGTATGATCTTTGCCCTTGTCTACTGCACTGCTGGTATCTCAGGTGGACACATAAACCCAGCAGTGACATTTGGTCTGTTCTTGGCAAGGAAACTGTCCCTTACAAGGGCTGTCTTCTACATAATCATGCAGTGCCTTGGAGCCATATGTGGAGCTGGTGTTGTTAAGGGGTTTGAAGGGTCAATCTACGAGCAGAAACTTGGTGGGGCCAACTTTGTAAACCATGGTTACACAAAGGGTGATGGCCTTGGTGCTGAAATTGTAGGCACCTTTGTTCTCGTCTACACTGTCTTCTCTGCAACTGATGCGAAGAGAAACGCCAGAGACTCACATGTCCCTATATTGGCTCCTCTTCCGATTGGGTTTGCAGTATTCTTGGTCCACTTGGCCACCATTCCTATCACGGGAACTGGCATCAATCCTGCTAGGAGTCTCGGAGCTGCAATCATCTACAACAGGGACCATGCTTGGGATGACCAATGGATCTTCTGGGTGGGACCCTTCATTGGAGCTGCTCTTGCTGCTGTTTATCACCAGCTTGTCATCAGAGCCATTCCATTCAAGGCCAGAGCTTAA 861 48.43 MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEAPPAPLFEPGELTSWSFYRAGIAEFVATFLFLYITILTVMGVNKAPSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEGSIYEQKLGGANFVNHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDQWIFWVGPFIGAALAAVYHQLVIRAIPFKARA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4000558 4002159 + Conep06aG0080800.1 Cone6ag0785 439669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0785 286 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0785 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 282 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cone6ag0785 286 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Cone6ag0785 286 NCBIfam MIP family channel protein 56 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0785 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Cone6ag0785 286 MobiDBLite consensus disorder prediction 1 33 - -
Cone6ag0785 286 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0785 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0785 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0785 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0785 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0785 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0785 286 SUPERFAMILY Aquaporin-like 44 278 IPR023271 -
Cone6ag0785 286 FunFam Probable aquaporin PIP1-2 37 286 - -
Cone6ag0785 286 CDD MIP 52 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1227 Cone-Chr1:56019949 Cone6ag0785 Cone-Chr6:4000558 4.31E-175 dispersed
Cone5ag0214 Cone-Chr5:905811 Cone6ag0785 Cone-Chr6:4000558 1.44E-173 dispersed
Cone6ag0785 Cone-Chr6:4000558 Cone8ag1291 Cone-Chr8:10585800 2.87E-135 dispersed
Cone6ag0785 Cone-Chr6:4000558 Cone8ag0296 Cone-Chr8:1713588 1.15E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0785 K09872 - csv:101217440 543.888