Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0789 ATGGTGGACTGGCTCGAATATTCAATTTTGTCGAATGGGTTTTTAGGGTCTTTAGATTGCCTTGACAATACTGGCTCTCATTTGGTGAAAGATGATGTCAATGACGGCCGTGATGAATACAGAGTTAAACTCCGTTCCTCGTTCGATCAACTTCTTTCTGTTTTTCTGGTAGAAATGGAGTCGAGGGGCATCATTAGGCCTATACCTGTAACACTTGGGGATAAAGGGTCTATTGATTTGTTCAAATTGATGCTGGGTGTAAGAGATAGAGGGGGTTTTGAGGAGGTTTCGGAAAGAGGGTTGTGGTCTTTAGTGACTGAGGAGTTGGGTTTGGATCATGGGTTGTCCGCTGCAGTGAAATTGATTTGTTGCAAGTATTTGAGTGAGTGGGCAAACTGGTTAAGGGAGAACCACATTGATAGGAGATTAGAAAATGAACAAGGGAATATGGCATTAGGATTAGCAACAGATCTCAGAGATTTGTTATTTGATGGACTTCTCGCATTGAAATCAGACAAGAATTATGGGAAGTGCATTGACCTTGTTGAAAATGAATTAAATTTGTCGAAAACCAAGTCTAATGGATTTAGAATGGATGAAGAAGGTGAGAAATGCAGTAATGATCGTTATGAAGAGGGAAGCCTTGAAGATGATGATGACGATAACGTTTGTGATATCACTGAAGCCGAACGCATCGCTAGCATGAAAAACATTGAATATCGTAAAAGAAAGAGAGAATCTTTATTGGGAATGGTGAATTGGGTGACTCAGGTTGCGAAGAATCCAAACGATCCTTCAATTGGGTTTATTCCAGGGCCGGCTAAGTGGAAAGATTATCAAGGCAACAAGGAGTTCTGGGTTCAGTTAATCAGTGTAAAGAATGCACTATTGCGAAGAAACCATATCAAGGCAATCAATGAAGAGTCTCCCTTGCAGAATAAGTTAAAAATGCATCCATCCATGTACGAGGATGATATTGATGACAATCATGGGTCTATAGAAAGGTCAAGATCTAGCAAGAGACTTCTCACTTTAGTGAAACCTCGTTTATGCTCTTGTAGCAATACTTGTTCAGCCACTCAATGTGAACCAAGCAATCACAAAACAGAGGTGGAGAAGGACCACAAGAAGAAAGTACCATCAAATGCCGATTCACCAGGTCCAAGGACAACAACGGTTAGCCCTTTCAGGGAAGAGCCTGTTGAAAAGGAAGTTTCTGTGGGACCTGAATTTCAAGCTGTTGTCCCAGAATGGAATGGTTTGGTTTCTGAGAGCGACTCTAAATGGCTTGGGACAAAGGTCTGGCCTTTGGAAGGTGGAAAGCATGATTTTTTAATGGAATTATATCTTATTGGGCGAGGAAGAAGCTATTCATGTAGTTGTCAACTGCCGGGTTCTGTGGAATGTGTTAGATTTCACATTGCTGAAGAGAAGATGAGACTGAAGCTCGAGCTGGGTCCAGTCTTTTATCGTTGGAGATTTGATCAGATGGGAGAGGCTGTTTCACTTCAGTGGAGTGATGTAGAGGAGAAGAGGTTTAAGGATTTGATGAGATGTAATCTTCCCTCACAGAATAAGTGTTTTTGGGATGATGCATTTAAGTTGTTTCCAATGAAAACAAGGGGGGACTTGATGAGCTATTACTTCAATGTGGTTCTTGTAAGGCGGAGAGTTTATCAGAATCGTGTGACGCCAAAAGATGTAGACAGTGATGATGATGAATCGGAGTTCGGATCTTTTGGTAGTTTCGGGGAAGAGGCGGTTAGACTCGTGGGTGGTGGATCCAATTCCGTCATATGTTTAGAGAACAAGCAATGCACCGATTTGGAGTTGTGA 1836 41.78 MVDWLEYSILSNGFLGSLDCLDNTGSHLVKDDVNDGRDEYRVKLRSSFDQLLSVFLVEMESRGIIRPIPVTLGDKGSIDLFKLMLGVRDRGGFEEVSERGLWSLVTEELGLDHGLSAAVKLICCKYLSEWANWLRENHIDRRLENEQGNMALGLATDLRDLLFDGLLALKSDKNYGKCIDLVENELNLSKTKSNGFRMDEEGEKCSNDRYEEGSLEDDDDDNVCDITEAERIASMKNIEYRKRKRESLLGMVNWVTQVAKNPNDPSIGFIPGPAKWKDYQGNKEFWVQLISVKNALLRRNHIKAINEESPLQNKLKMHPSMYEDDIDDNHGSIERSRSSKRLLTLVKPRLCSCSNTCSATQCEPSNHKTEVEKDHKKKVPSNADSPGPRTTTVSPFREEPVEKEVSVGPEFQAVVPEWNGLVSESDSKWLGTKVWPLEGGKHDFLMELYLIGRGRSYSCSCQLPGSVECVRFHIAEEKMRLKLELGPVFYRWRFDQMGEAVSLQWSDVEEKRFKDLMRCNLPSQNKCFWDDAFKLFPMKTRGDLMSYYFNVVLVRRRVYQNRVTPKDVDSDDDESEFGSFGSFGEEAVRLVGGGSNSVICLENKQCTDLEL 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4014721 4016922 - Conep06aG0081300.1 Cone6ag0789 439673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0789 611 ProSiteProfiles ELM2 domain profile. 403 438 IPR000949 -
Cone6ag0789 611 MobiDBLite consensus disorder prediction 356 394 - -
Cone6ag0789 611 ProSiteProfiles ARID domain profile. 42 135 IPR001606 GO:0003677(InterPro)
Cone6ag0789 611 SMART bright_3 43 136 IPR001606 GO:0003677(InterPro)
Cone6ag0789 611 CDD ARID 45 130 - -
Cone6ag0789 611 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 41 584 - -
Cone6ag0789 611 MobiDBLite consensus disorder prediction 366 382 - -
Cone6ag0789 611 Gene3D - 38 150 IPR036431 GO:0003677(InterPro)
Cone6ag0789 611 Pfam ARID/BRIGHT DNA binding domain 59 129 IPR001606 GO:0003677(InterPro)
Cone6ag0789 611 SUPERFAMILY ARID-like 47 139 IPR036431 GO:0003677(InterPro)
Cone6ag0789 611 SMART ELM2_2 405 456 IPR000949 -
Cone6ag0789 611 SMART ARID_2 39 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0789 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0050 Cone-Chr19:325094 Cone6ag0789 Cone-Chr6:4014721 1.35E-27 dispersed
Cone6ag0789 Cone-Chr6:4014721 Cone9ag0550 Cone-Chr9:2618445 1.43E-25 dispersed
Cone11ag0434 Cone-Chr11:2182942 Cone6ag0789 Cone-Chr6:4014721 8.63E-93 wgd
Cone14ag0369 Cone-Chr14:1724663 Cone6ag0789 Cone-Chr6:4014721 2.26E-119 wgd
Cone15ag0406 Cone-Chr15:1907204 Cone6ag0789 Cone-Chr6:4014721 3.72E-114 wgd
Cone18ag1072 Cone-Chr18:7879200 Cone6ag0789 Cone-Chr6:4014721 3.91E-79 wgd
Cone6ag0789 Cone-Chr6:4014721 Cone9ag0791 Cone-Chr9:3797182 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46331 PF01459 Porin_3 2.10E-75 CL0193 Cone TR