Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0797 ATGGGATTTCCAGTTGCATATACCGAACTTCTCATCCCAAAATTATTCCTCAACACACTTTCTGTTCTGGGTTTCATCAGAAAACTAATCTCCACCCTCTTTTACTATCTGGGTATAAAGGATTTCCTCGAGCCCGACATTCCATGGGCCCAAGCCCACCAACCCGAGTCACAGAGCCGTTTAGCCGAATTCGATTCCGTCTCGACCATGCTGATACGCGAGCTCTTACCCGTCGACAAGTTCTCCGACCTCGTAGACCCGCCCGACAGCTGCTCGGTCTGTCTCTACGAGTTTGAGGCGGACGATGAGATCCGACGGCTCACGAACTGCCGGCATATATTTCACAAGGGCTGTCTGGACCGTTGGATGGCGTACGAGCAGAAGACTTGCCCGCTCTGTCGTTCGCCGTTTATTCCTGCCGATTTGCAGAGCTCTTTCAATGAGATGATCTGGGCCGCTTCTGAAATTCCCGAATTTTACGGCGAATATACCTATTTCGCCACCGGTTTGTAA 513 50.88 MGFPVAYTELLIPKLFLNTLSVLGFIRKLISTLFYYLGIKDFLEPDIPWAQAHQPESQSRLAEFDSVSTMLIRELLPVDKFSDLVDPPDSCSVCLYEFEADDEIRRLTNCRHIFHKGCLDRWMAYEQKTCPLCRSPFIPADLQSSFNEMIWAASEIPEFYGEYTYFATGL 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4050799 4051427 - Conep06aG0082100.1 Cone6ag0797 439681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0797 170 Pfam Ring finger domain 89 134 IPR001841 -
Cone6ag0797 170 SUPERFAMILY RING/U-box 71 141 - -
Cone6ag0797 170 SMART ring_2 91 133 IPR001841 -
Cone6ag0797 170 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Cone6ag0797 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 140 IPR013083 -
Cone6ag0797 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 8 141 - -
Cone6ag0797 170 CDD RING-H2_RHA1-like 89 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0437 Cone-Chr11:2199346 Cone6ag0797 Cone-Chr6:4050799 4.29E-52 wgd
Cone14ag0373 Cone-Chr14:1746923 Cone6ag0797 Cone-Chr6:4050799 5.61E-64 wgd
Cone15ag0411 Cone-Chr15:1932700 Cone6ag0797 Cone-Chr6:4050799 2.92E-65 wgd
Cone18ag1070 Cone-Chr18:7865316 Cone6ag0797 Cone-Chr6:4050799 1.81E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0797 K16281 - rcu:8287413 258.07