Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0798 ATGGCCGGTGAGCTTTATCATGGCCATGAAGACCAAACCCAGTTCAGAAATGATCAGATCCAGGGCTTGGTAGAGATCCAAGGCTCGTTTACGTGGAAAAAGGACAGCTTTCTTACAAAGCCAGATCAGAATCATCTTCAAACTAATTTCATAACAGCAAGTGATAACGATCATCAGAATCTATCAATGGTTAATGATCATGGTCATGATCATCATGATGACTGGCAAGAGAGCCGATTCGTTAACTTTTACGATTCCTCCTATTCTTCTTCCTCTTTATCCTCATCATCTTCTTCTTCTTCTTTGAGACCATGTACTGTTCTTCTTCGTCAAGGTCTTTCACTATCTCTTTCTTCAACAAACCCTTCCACTAGTACTACTGTTGGATTACAGACCACCACCTTTGAACATGCCAGTGATCAAGTCCCACAAAATCCTGAGGATATGATCAAGCTCTTTGATCAAGAAGACGAACAAGAGGATCATATGAATATTTCACAAGATGGGTACTTGGGAAAATTTGAAAGTCTTCTCCATCAGCAACAAGTTGAGTTTTATTTACTAGTGAAGAACTGTAAGTACTTGAGCCCAGCTCAGGAACTTCTCAACGAGTTCTGTAGCCTCAGTACAAAGCCAGATGGTCAAGTACAAAACTTGCGTAGTAATAAGAAGATTACCGAACTGGTAGAGGAAAATCGTCAGGACATGATGTGTACTAGTACTACTACTTCTTCCTCAAGAATACTGAAGCAAACACTCAATTCCCTTGATTTCATAGAATTGCAGAAGAGAAGATCCAAGCTTTATTCTCTACTAGAAGAGACTAAAAGAAGATACAAGCACTATTGCAACCAAGTGAAAGCGATGGTGTCGTCATTTGAGGCGGTGGCCGGAAACGGGGCGGCGGCAGTGTACTCGGAGTTGGCCTCAAAGGCGATGTCAAGGCATTTCAGGTGTCTAAAAGATGGGATAGTGAGTCAAATTCAGGAAACAAGAAATGCCATGGGGATAAAAGACCAGATTGCCCCTGGCGCTACCAGAGGCGAGACTCCGAGGCTTAGAGTTCTCGATCTGGCTTTGAGGCAACAAAAAGCTTTTCAGGAATTTGGGTTGATGGAGAGGCATCCATGGCGGCCTCAACGCGGCCTTCCAGAACGATCTGTTTCCGTTCTCCGAGCTTGGCTCTTCGAACACTTCCTTCACCCGTATCCAAGCGATGTTGATAAACATAGCTTAGCCCGCCAAACCGGTCTTACAAGATGCCAGGTGTCAAATTGGTTCATAAATGCAAGGGTGAGACTGTGGAAGCCGATGGTGGAAGAAATGTACATGGAAGAAACAAAGCTGGAAGAAGACAATATTCCCAGAAAAGACAACCTTAACACTATCATGCCACCCTCAGATGAAGTATTTGATCATGAGTTTCATATAAACCCATTTGATCAGGATCAAAAACTTAACCATGATCAACTCCAAATGGCCGGCAGCTTATACCAATTACAAGCGGGCACAATGAGTACAACTACTACTCATCTTGATTTCTCATCATACAATAACCCTCATCAGATGTCAGATGGCATGATTTCAGCTTATGGAAATGAAAATAGCAGTGCTAATCAGATGATCAACTTCAAGAGCAGCGGTGGCGGTGGCGTGTCGTTGTCCCTCGGATTACATGAACATGACCAACAGGACGGTAAGAATATTATCAATGGGATGAGCTTAGCATTTTCACCGCCGCCTTCGACACAGAGTAATTATGCGTTCTTAGGACCAAGATCTCACATGGAAGATCCATGCATAGCAGTTCGCGTCGATCATGATCGATACTCGGTTTTAGACGGGGAGGCCCAGAATTTGCCTTACAGAAATTTGATGGGGCCTCATGATCAGTTCCTTCAGGACTTGAAAAGATAG 1917 43.45 MAGELYHGHEDQTQFRNDQIQGLVEIQGSFTWKKDSFLTKPDQNHLQTNFITASDNDHQNLSMVNDHGHDHHDDWQESRFVNFYDSSYSSSSLSSSSSSSSLRPCTVLLRQGLSLSLSSTNPSTSTTVGLQTTTFEHASDQVPQNPEDMIKLFDQEDEQEDHMNISQDGYLGKFESLLHQQQVEFYLLVKNCKYLSPAQELLNEFCSLSTKPDGQVQNLRSNKKITELVEENRQDMMCTSTTTSSSRILKQTLNSLDFIELQKRRSKLYSLLEETKRRYKHYCNQVKAMVSSFEAVAGNGAAAVYSELASKAMSRHFRCLKDGIVSQIQETRNAMGIKDQIAPGATRGETPRLRVLDLALRQQKAFQEFGLMERHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHSLARQTGLTRCQVSNWFINARVRLWKPMVEEMYMEETKLEEDNIPRKDNLNTIMPPSDEVFDHEFHINPFDQDQKLNHDQLQMAGSLYQLQAGTMSTTTTHLDFSSYNNPHQMSDGMISAYGNENSSANQMINFKSSGGGGVSLSLGLHEHDQQDGKNIINGMSLAFSPPPSTQSNYAFLGPRSHMEDPCIAVRVDHDRYSVLDGEAQNLPYRNLMGPHDQFLQDLKR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4056769 4059649 + Conep06aG0082200.1 Cone6ag0798 439682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0798 638 Gene3D - 372 450 - -
Cone6ag0798 638 CDD homeodomain 377 438 IPR001356 GO:0003677(InterPro)
Cone6ag0798 638 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677(InterPro)
Cone6ag0798 638 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone6ag0798 638 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 106 472 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone6ag0798 638 SMART prehox3 183 326 IPR006563 -
Cone6ag0798 638 SMART HOX_1 377 441 IPR001356 GO:0003677(InterPro)
Cone6ag0798 638 Pfam Associated with HOX 189 324 IPR006563 -
Cone6ag0798 638 SUPERFAMILY Homeodomain-like 378 444 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0798 Cone-Chr6:4056769 Cone8ag0088 Cone-Chr8:468633 1.89E-75 dispersed
Cone12ag0290 Cone-Chr12:1567141 Cone6ag0798 Cone-Chr6:4056769 1.87E-125 wgd
Cone6ag0798 Cone-Chr6:4056769 Cone8ag0284 Cone-Chr8:1635714 2.87E-128 wgd
Cone6ag0798 Cone-Chr6:4056769 Cone9ag0798 Cone-Chr9:3829853 2.15E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46333 PF16561 AMPK1_CBM 2.90E-17 CL0369 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0798 - - - 0.0