Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone6ag0800 | ATGAAGAAGTTCATTTCGACACTGTCGTCTCACCACTGCTCCTCCATCAAATCGTTACTACACAATCGTCTCTATCCACAAGCTCTGAAATCGTCCATTGCTTCTCTTCCCAATTATCCTCTCCTCACCGATGAAATCTACGCTCTCTTCATCAAATCCGGTCACATTCTTGATCATTTCCTCTCCGCCAGTCTCCTCTCTCATTTCTCAAAAATCGGAGATTTTTCTCGGTCTATAGGGTACCTATTTGATACCCTAAACCCAGATATAGTCACTTACAACGCTCTTCTTTCAGGGTATGCTCGATTCGGGTTAAGTGAAGCTGGTTTTGGGCTTTTTCGTGAGTTGAGACATCTAGGTTTGAAGCCCGATGTGTTTACGTCTAGTTCGTTGGTTAAACTCTGTAAGAGTCTGGAAGATAATGAGATTGTTCATGGAGTTTGTTTCCGAATGGGGTTTAGTTCAGCTACTTATTTGGTCAGTGGCTTTACAGAGAATTACGCTAGGGCAGGGGAAATTTGCTCGGCGGAGAAGTGCTTTGAGGAGTGTTCGGTTTTGGATTCTGTGGTATGGACCTCTATGATTTCTGGATTTGTTTGGAATGAGGAGTTTGAGAAGGGGAAAGAGGTTTTTGTGGAGATGATGAAATTGGGTTTTGATTTGAATGAGTTTTGTTTGACTAGTGCTCTTGGTGCAATGTTTGATGTCAGAGAGGGTAAATCGATTCATGGAGTTGGCTTCAAGATGGGTCTTTTATGTGGTGGTTCAATTTATTTAAGCAATGCCGTTATGAATATGTACTCTAGGTGTGGGAATAAGCCCGATGCAGTCAAAGTGTTTGATGATATGCCTGAACCAGATATAGTCTCTTGGACTGAAAGGATAGGTGCTGCTCGAGATGATTTTGAGGCGCTTGAGTTGTTTAGAGATTTGCATTCCAGAGATTTACAGCTGATCAATGAGTATACAGTAATCAATGTCTTGTTACACATTGGAAGCTCAGGAAAGGTAAAATCTTTCAAGCAAATCCAAGCACTTTGTCAAAAAGCTGGTTTTTTGGTATTTATATCGCTCTGCAATTCAATTATATCAATAAATGGAAAATGCGGGGATATGGATGATGCTAGACGCGTTTTTGATGATATGCCTGAACCGGATTCTGTTTCCTGGAATTCATTGATCGGTGGTTATTCGGAAAATGGACTTGTTTGCGAGGCTTTGACATTATTTTCTCAAATGCGTGATTTTTCTCTACATCCTAATTTATTTACTTTTTCTAGCCTTCTTTATGGTTTGTCCAAATCCAGTTTGGAAAAGACTGTGATGCAAATTCATTCGTATGTAACAAAATTTGGTTTGACTTCAGATCATTCCATGGTCTCATGCTTGATTACAGCATATGGTAAGTGTAATGCGATAGATGAATCAAAGCGGGTTTTTTCAGAGATTGATGCAAAAAACGTTATATATATGAATACTATGTTAACCATTTTTGTCCAATCTGGTCTTCATACTGATGCTCTTGATTTGTTCAACATCTCAAGAGATTTGCACAACCATGACATTGATGGCACGTCTTTTAGTATTGCTATTAAATCTTGTGGTGCTTTATCTGATCTTGATCAAGGAAAAATGATTATTGGAACTTCCTTTAAAATTGGATTTGATGAAGATAACTTTGTTGAAAGTGCTGTTATAGACATGTACTGTAAGTGCGGATGCATAGCTGAGGCAGAAAAGGCTTTTAAGATGAAATCTACTGATTATAATCTAGCTGTTTGGAATGCTATGATAACTGGATATTCTCAGCATGGCCATGCTAATGAAGTTTCCTTGCTTTTCAGAAAGATGTCTGATTTAGGAATAGAACCTGATGAAATAACTTTTCTTGGAGTTCTTAGTGCATTCCGTCATGTGGGTTTGGTGAAAGAGGCTCGCTCTTGCTTAGACTCCATGTTTGTAGTTTATGGAGTGATGCCTTGTCTAGAACACTATGCTTGTATGGTCGATTTGCTAGGTAGAGTAGGGCTTTTGGAAGATGCAAAGAGAGTTATTGAGGAAATGCCCATTGGGGCAGATGCTTATATATGGCAGATTCTTTTATCGGCTTGTAATGATCATGGGAATATTGATATGGGATTAATTGCTGGGCGGAAACTTGTTGACATTCAGCCTGGAAATGAATCGGCATATCTTCTTCTGTCTAATCTCTATGCTAAGGCGGGCATGTGGAGTGATGTGGGAAAATTGCGAAGGGAAATGAAGGAAAAAGTAATAAGGAAAGAGCCGGGCTCTAGTTGGATTCAGGTTGGGAGAATCACACATTTCTTCTACGCTGGTGATAATTCACATTCTAGGAGTGGAGAGATTTACATGCAGCTAACAAGTGTGTATGGGCAAATACTAGCATCATCTCCAAGGTAA | 2424 | 39.48 | MKKFISTLSSHHCSSIKSLLHNRLYPQALKSSIASLPNYPLLTDEIYALFIKSGHILDHFLSASLLSHFSKIGDFSRSIGYLFDTLNPDIVTYNALLSGYARFGLSEAGFGLFRELRHLGLKPDVFTSSSLVKLCKSLEDNEIVHGVCFRMGFSSATYLVSGFTENYARAGEICSAEKCFEECSVLDSVVWTSMISGFVWNEEFEKGKEVFVEMMKLGFDLNEFCLTSALGAMFDVREGKSIHGVGFKMGLLCGGSIYLSNAVMNMYSRCGNKPDAVKVFDDMPEPDIVSWTERIGAARDDFEALELFRDLHSRDLQLINEYTVINVLLHIGSSGKVKSFKQIQALCQKAGFLVFISLCNSIISINGKCGDMDDARRVFDDMPEPDSVSWNSLIGGYSENGLVCEALTLFSQMRDFSLHPNLFTFSSLLYGLSKSSLEKTVMQIHSYVTKFGLTSDHSMVSCLITAYGKCNAIDESKRVFSEIDAKNVIYMNTMLTIFVQSGLHTDALDLFNISRDLHNHDIDGTSFSIAIKSCGALSDLDQGKMIIGTSFKIGFDEDNFVESAVIDMYCKCGCIAEAEKAFKMKSTDYNLAVWNAMITGYSQHGHANEVSLLFRKMSDLGIEPDEITFLGVLSAFRHVGLVKEARSCLDSMFVVYGVMPCLEHYACMVDLLGRVGLLEDAKRVIEEMPIGADAYIWQILLSACNDHGNIDMGLIAGRKLVDIQPGNESAYLLLSNLYAKAGMWSDVGKLRREMKEKVIRKEPGSSWIQVGRITHFFYAGDNSHSRSGEIYMQLTSVYGQILASSPR | 807 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4067642 | 4071004 | + | Conep06aG0082400.1 | Cone6ag0800 | 439684 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone6ag0800 | 807 | Gene3D | Tetratricopeptide repeat domain | 444 | 552 | IPR011990 | GO:0005515(InterPro) | |
| Cone6ag0800 | 807 | Pfam | E motif | 707 | 769 | IPR046848 | - | |
| Cone6ag0800 | 807 | FunFam | Pentatricopeptide repeat-containing protein | 563 | 801 | - | - | |
| Cone6ag0800 | 807 | Gene3D | Tetratricopeptide repeat domain | 52 | 151 | IPR011990 | GO:0005515(InterPro) | |
| Cone6ag0800 | 807 | Gene3D | Tetratricopeptide repeat domain | 152 | 241 | IPR011990 | GO:0005515(InterPro) | |
| Cone6ag0800 | 807 | Gene3D | Tetratricopeptide repeat domain | 319 | 443 | IPR011990 | GO:0005515(InterPro) | |
| Cone6ag0800 | 807 | Gene3D | Tetratricopeptide repeat domain | 564 | 790 | IPR011990 | GO:0005515(InterPro) | |
| Cone6ag0800 | 807 | Pfam | PPR repeat | 492 | 512 | IPR002885 | - | |
| Cone6ag0800 | 807 | Pfam | PPR repeat | 261 | 285 | IPR002885 | - | |
| Cone6ag0800 | 807 | Pfam | PPR repeat | 189 | 219 | IPR002885 | - | |
| Cone6ag0800 | 807 | Pfam | PPR repeat | 665 | 688 | IPR002885 | - | |
| Cone6ag0800 | 807 | Pfam | PPR repeat | 459 | 487 | IPR002885 | - | |
| Cone6ag0800 | 807 | Pfam | PPR repeat | 359 | 383 | IPR002885 | - | |
| Cone6ag0800 | 807 | Pfam | PPR repeat | 563 | 583 | IPR002885 | - | |
| Cone6ag0800 | 807 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 89 | 123 | IPR002885 | - | |
| Cone6ag0800 | 807 | PANTHER | OS07G0578800 PROTEIN-RELATED | 34 | 232 | IPR045215 | GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER) | |
| Cone6ag0800 | 807 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 590 | 624 | IPR002885 | - | |
| Cone6ag0800 | 807 | FunFam | Pentatricopeptide repeat-containing protein | 337 | 439 | - | - | |
| Cone6ag0800 | 807 | NCBIfam | pentatricopeptide repeat | 388 | 421 | IPR002885 | - | |
| Cone6ag0800 | 807 | NCBIfam | pentatricopeptide repeat | 593 | 626 | IPR002885 | - | |
| Cone6ag0800 | 807 | NCBIfam | pentatricopeptide repeat | 189 | 222 | IPR002885 | - | |
| Cone6ag0800 | 807 | NCBIfam | pentatricopeptide repeat | 91 | 125 | IPR002885 | - | |
| Cone6ag0800 | 807 | Pfam | PPR repeat family | 385 | 434 | IPR002885 | - | |
| Cone6ag0800 | 807 | Pfam | PPR repeat family | 592 | 636 | IPR002885 | - | |
| Cone6ag0800 | 807 | Pfam | PPR repeat family | 88 | 135 | IPR002885 | - | |
| Cone6ag0800 | 807 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 386 | 420 | IPR002885 | - | |
| Cone6ag0800 | 807 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 256 | 290 | IPR002885 | - | |
| Cone6ag0800 | 807 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 187 | 221 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone6ag0800 | - | - | - | - | 0.0 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone6ag0800 | Cone-Chr6:4067642 | Cone19ag0653 | Cone-Chr19:5569211 | 2.99E-125 | dispersed | |
| Cone6ag0800 | Cone-Chr6:4067642 | Cone9ag0799 | Cone-Chr9:3835780 | 2.77E-68 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi2g27 | Blo02g01116 | . | . | Bda08g00510 | Bpe05g00653 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone6ag0800 | . | . | . | . | . | . | . | . | . | . | . | Bma05g00825 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | |
| Vvi2g252 | . | . | . | Bda08g00385 | . | . | Bma07g01031 | Bma14g00099 | . | . | Cma02g00944 | Cma15g01321 | Car02g00693 | Car15g01186 | . | . | Cpe05g00769 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone6ag0800 | . | . | Csa05g00160 | Chy09g01338 | . | Blo03g00798 | . | Bda07g00155 | . | Bpe08g00905 | Bpe11g00373 | . | . | . | Cmo02g00953 | Cmo15g01384 | . | . | . | . | . | . | Bhi12g00081 | . | . | . | . | . | Lcy12g1514 | Cla01g00142 | . | . | . | . | . | . | . | . | . | Cme09g01885 |