Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0808 ATGTCAGCCACAGATTATCATAGCTCCTTCCTGGGCCGGATAAGCATCCGACGCAACCAAGTCGCGTCCATGGACCACGAGCAAGAGCTCGATAATCTGGGCCTCTTTCAAAAACAAGTTTCCGAACGTTTATCTGACCTCTTATATTCTTCCTCCGACGAATCCTCCTCTGATCCATTCCTCTCCATCGCCTGGCTCCGTAAACTCTTGGACATCTTCCTTTGTTGCGAGGTCCAATTCAAATCCATCCTCTTAACGGACCACGATCCAGCTCAGATCTCCAAACCCCCTCTCGACCGCCTTGTCCCTGAATTCCTTGATCGCGTCGTCAAAGCTTTGGATATATGCAATGCCGTCATGCACGGCGTCGAATCGGTCCGGAATTATCAGAAACTGGCGGAGATTGCCGTCTCCGCTTTGGGCCACGGGCCCAACATCAGTGACGGACAAGTTAAACGTGCCCGTAAGGCCTTGAATTCGATGGTTAATTCCATGACGCTAGACGACAAAGACGGAACTAGTGCTAACAAATTTGCCGAGCGAACCTGGTCGTTCGGCCGACGGGGAGTAGGCAGTCTGTCGGAGCATAAAGACAGTCTCTCCGGCCAGTCAAGGTCGTCGGCTTGGTCCATGGCGAGAGGCTGGTCAGCGGCGAAGCAGATTCAAACGATGTCGTCAAATCTGGTACCGCCGCGTGGGGCAGAATCGAACGGGTTGGGTTTATTGGTTTACATAATGAGCGCGGTTATGCTGTTCGTGATGTGGGCCCTGGTGGCGGCGATTCCGTGTCAAGAGAGGAGCGGTTTGCGGGCCCATCTTCAGGTGGGAGGGAAGCAGATGACGTGGGCTCAACCGATGGTGGGCCTGCAGGATAAGATTACGGAGGAATGGAGGAAGAAGGAGAAGAGAGGGTCATGTGGGCTGTTGGATGAGATGCAGAGGATGGAGAGGTTGGGTCAGTCGTTGATCGAGTTTGCGGATGGTTTTGAGTTTCCGGCGGAGGGGGAGAGGGAGGAGGAGGTGGCGGCGCTCGTGGCGGAATTGGGGGAAAATTGTCGGAGAATGGAGGAAGGATTGGTGCCTTTACAGCAGCAGATTAGAGAGGTGTTTCATAGAGTTGTCAGGAGTAGAACGGAAGTTCTAGATGCGTTTGATCGTGTAGGGAAAGTTTCTGTACCCGTTCTGTTTGTGATTGTTGGCGGTGGTAATGCTGCTCGGACTTTCGTTGAACATGGCCTAGCAGAAGGACGCCCCTGTATTGTGTCTAAAGAGGCTCATGCGCCTTATGAGCGTCCGGCCTTAACGAAAGGATACTTGTTTCCTCTAGAAACAAAGCCTGCTAGATTACCTGGTTTTCATACATGTGTTGGATCTGGTGGAGAAAGGCAAACTCCTGAGTGGTATAAGGATTTGTGTTTGAACTATTTTCGTATCTGTTCCCGATTTCCAGATAAACTTGGAGGCGACCTTCCTGGTGTTCACTACATTCGGGACATTGCAGATGCAGATTCTCTAGTGTCGTCTTTGGAGAAGTCACAGAAAGTTGTTATAGTTGGTGGTGGTTATATTGGCATGGAGGTTGCAGCAGCAGCTGTCGGTTGGAAGCTTGACACAACAATTGCATTTCCAGAAGATCATCTTCTACAAAGGATTTTTACTCCTTCACTAGCTAGGAAATATGAAGAATTCTACAAACAAAACGGTGTTAAATTTTCCAAGGGTGTTTCCATAAAAAACATAGAAGCTGGTGCTAATGGTCGTGTACCTGCTGTTAAACTTGAGGATGGATCTATCATAGAAGCAGATACGGTAATCATAGGTATTGGAGCTCAACCTGCTGTAAGTTCATTTGAAAGTGTCGGGTTAAATGATAATGTTGGTGGTATTCAGGTTGATGGTCAGTTTCGGACAAATATACCCGGGAGCTTTGCAGTTGGAGATGTTGCAGCCTTCCCATTGAAAATGTATGATCGTATTGCTCTAGTTGAGAATGTTGATCATGCTCGTCGATCAACCCAGCACTGTGTTAAGTCATTACTGAATGCCCATACTCACACGGTGTTTGAGTATGAAGGCAGCCCTAGAAAAATATGGTGGCAATTCTTTGGAGACAATGTGGGTGAGACGATTGAGATTGGGAATTTTGATCCTAAGATTGCCACCTTCTGGATAGATTCCGGTAAACTAAAAGGAGTTCTTCTTGAAAGTGGAAGTCCTGAGGAATTTCAATTCCTTCCTGAACTTGCAAGGAGGCAACCTAATGTTGAGAAAGCCAAGCTTCAAAATGCCTCTTCAGTCGAGGAAGCACTTGAATTTGCGAGAAAATCATTATGA 2334 48.07 MSATDYHSSFLGRISIRRNQVASMDHEQELDNLGLFQKQVSERLSDLLYSSSDESSSDPFLSIAWLRKLLDIFLCCEVQFKSILLTDHDPAQISKPPLDRLVPEFLDRVVKALDICNAVMHGVESVRNYQKLAEIAVSALGHGPNISDGQVKRARKALNSMVNSMTLDDKDGTSANKFAERTWSFGRRGVGSLSEHKDSLSGQSRSSAWSMARGWSAAKQIQTMSSNLVPPRGAESNGLGLLVYIMSAVMLFVMWALVAAIPCQERSGLRAHLQVGGKQMTWAQPMVGLQDKITEEWRKKEKRGSCGLLDEMQRMERLGQSLIEFADGFEFPAEGEREEEVAALVAELGENCRRMEEGLVPLQQQIREVFHRVVRSRTEVLDAFDRVGKVSVPVLFVIVGGGNAARTFVEHGLAEGRPCIVSKEAHAPYERPALTKGYLFPLETKPARLPGFHTCVGSGGERQTPEWYKDLCLNYFRICSRFPDKLGGDLPGVHYIRDIADADSLVSSLEKSQKVVIVGGGYIGMEVAAAAVGWKLDTTIAFPEDHLLQRIFTPSLARKYEEFYKQNGVKFSKGVSIKNIEAGANGRVPAVKLEDGSIIEADTVIIGIGAQPAVSSFESVGLNDNVGGIQVDGQFRTNIPGSFAVGDVAAFPLKMYDRIALVENVDHARRSTQHCVKSLLNAHTHTVFEYEGSPRKIWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFQFLPELARRQPNVEKAKLQNASSVEEALEFARKSL 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4099019 4104578 + Conep06aG0083200.1 Cone6ag0808 439692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0808 777 Gene3D - 686 773 IPR016156 -
Cone6ag0808 777 Pfam Monodehydroascorbate reductase 3-like, C-terminal domain 697 761 IPR048618 -
Cone6ag0808 777 SUPERFAMILY FAD/NAD(P)-binding domain 481 608 IPR036188 -
Cone6ag0808 777 Gene3D - 484 608 IPR036188 -
Cone6ag0808 777 PRINTS FAD-dependent pyridine nucleotide reductase signature 396 415 - -
Cone6ag0808 777 PRINTS FAD-dependent pyridine nucleotide reductase signature 514 532 - -
Cone6ag0808 777 PRINTS FAD-dependent pyridine nucleotide reductase signature 601 617 - -
Cone6ag0808 777 PRINTS FAD-dependent pyridine nucleotide reductase signature 627 649 - -
Cone6ag0808 777 PANTHER APOPTOSIS-INDUCING FACTOR 1 396 470 IPR050446 GO:0005737(PANTHER)|GO:0016651(PANTHER)
Cone6ag0808 777 Pfam Pyridine nucleotide-disulphide oxidoreductase 488 662 IPR023753 GO:0016491(InterPro)
Cone6ag0808 777 Pfam Protein ROH1-like 1 383 IPR008511 -
Cone6ag0808 777 Gene3D - 394 476 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0808 K08232 - - cit:102615220 622.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0377 Cone-Chr20:1744294 Cone6ag0808 Cone-Chr6:4099019 1.51E-90 dispersed
Cone6ag0808 Cone-Chr6:4099019 Cone8ag0971 Cone-Chr8:9145986 1.68E-79 dispersed
Cone9ag0805 Cone-Chr9:3866289 Cone6ag0808 Cone-Chr6:4099019 3.66E-235 transposed
Cone12ag0285 Cone-Chr12:1541854 Cone6ag0808 Cone-Chr6:4099019 7.62E-73 wgd
Cone6ag0808 Cone-Chr6:4099019 Cone8ag0279 Cone-Chr8:1614860 9.25E-137 wgd
Cone6ag0808 Cone-Chr6:4099019 Cone9ag0804 Cone-Chr9:3861698 1.38E-246 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005485 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 39