Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0812 ATGGAAGGCTCATCGTGGGATTTGCAAGCTATAGTAAGAGGATCATACACCAATGAAACTGACCATGATTCATTAATTAGTAATGATATGATCAAAATGGAATCACCGCAGCTACCAGCGTCCGTCTTTGATCAATACCCTAATTCAGTCAGTACTTTTCTTGATCATGATGAATATGCAAGTTTTGCGGATTTCTTTCAAACCGCCACAACAAGTTTAGATGAATTGGAGGGGCTTTACAAGCCTTTCTATCCGGTATTATCGCAACCGATCTTTTCCTCTCAGACCGTCAGTTTTACTGATCCGGCCTCCATTTCTGCTCCTAGAGAATTAGTCAAGGAACCGGATGATCATCCTCCAAAGCATGCGCAGCACCACAAAAACCAGCAAACATCATCATCTGCTAAGACCAAAACAAGCAAGAAGAATCAACAAAATAGGGTGATGAAACAGGTGAAAGCAGATGGGCTGAGCTCAGACATGTGGGCTTGGAGGAAATACGGGCAGAAACCTATAAAGGGATCGCCATATCCGAGAAGCTATTATAGATGTAGTAGCTCAAAGGGATGTTCAGCAAGAAAGCAAGTGGAACAAAGCCCTTCCGATCCAGACATTTTCATCATAACCTACATGTCGGAACACGACCATGCCCTCCCGACTCGCCGGAACTCACTTGCTGGAATCAGCAAGAGCAAGTACTCCTCGCCCAAACCTAAAATCACTACTTGTGATCACGACCAGGCCGTCAATAGTATTATCGGTTCGCCAAATCCCAATAATTATAAGGTTATGTCTCCTACTACATCTCAATCTGTAGTAACTTATGAAGACCAAGATCTCAGGCATGTTAATAATATGTGCGTAAAAAAGGAAGGAGAGTATTATGAGGCAATGTTCACGGAACAAAGTGACGGTAATTGCGGCCAATGCGCGATGGGTAGTTCCGATGATTGTGATAATCATCAGATCATTTCGAGTGACGATTTGTTTCCAAGCCTGGAAGAGCTACTTTTTGGATAG 1020 43.14 MEGSSWDLQAIVRGSYTNETDHDSLISNDMIKMESPQLPASVFDQYPNSVSTFLDHDEYASFADFFQTATTSLDELEGLYKPFYPVLSQPIFSSQTVSFTDPASISAPRELVKEPDDHPPKHAQHHKNQQTSSSAKTKTSKKNQQNRVMKQVKADGLSSDMWAWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKQVEQSPSDPDIFIITYMSEHDHALPTRRNSLAGISKSKYSSPKPKITTCDHDQAVNSIIGSPNPNNYKVMSPTTSQSVVTYEDQDLRHVNNMCVKKEGEYYEAMFTEQSDGNCGQCAMGSSDDCDNHQIISSDDLFPSLEELLFG 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4127490 4128756 + Conep06aG0083600.1 Cone6ag0812 439696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0812 339 Gene3D WRKY domain 141 212 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0812 339 ProSiteProfiles WRKY domain profile. 153 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0812 339 SMART WRKY_cls 158 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0812 339 MobiDBLite consensus disorder prediction 126 152 - -
Cone6ag0812 339 SUPERFAMILY WRKY DNA-binding domain 156 219 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0812 339 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0812 339 FunFam WRKY transcription factor 22 141 212 - -
Cone6ag0812 339 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 334 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone6ag0812 339 MobiDBLite consensus disorder prediction 111 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0812 Cone-Chr6:4127490 Cone6ag1143 Cone-Chr6:8641222 8.32E-33 dispersed
Cone11ag0447 Cone-Chr11:2253478 Cone6ag0812 Cone-Chr6:4127490 1.75E-39 wgd
Cone14ag0387 Cone-Chr14:1810039 Cone6ag0812 Cone-Chr6:4127490 7.43E-43 wgd
Cone14ag0050 Cone-Chr14:312009 Cone6ag0812 Cone-Chr6:4127490 1.07E-39 wgd
Cone15ag0424 Cone-Chr15:2001244 Cone6ag0812 Cone-Chr6:4127490 4.73E-37 wgd
Cone15ag0055 Cone-Chr15:335860 Cone6ag0812 Cone-Chr6:4127490 1.32E-40 wgd
Cone18ag1061 Cone-Chr18:7777622 Cone6ag0812 Cone-Chr6:4127490 2.30E-41 wgd
Cone6ag0812 Cone-Chr6:4127490 Cone9ag0811 Cone-Chr9:3902804 3.99E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46334 PF06650 SHR-BD 1.00E-10 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0812 K13426 - vvi:100251862 203.371