Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0820 ATGGAGCAGAAAAGCCTTCTGTTGTCGGCGTTGGGTGTAGGGGTGGGAGTGGGAGTAGGGCTGGGATTAGCATCGGGGCAGAGCGTGAGAAAATGGACGGGATCTAACCCTTCGTCCAACTCCATAACCGCTGAAATTGTCGAGCAAGAAATGCTTAGGAAGATCGTAGATGGCAGAGAAAGCAAGGTCACGTTTGACGAATTCCCCTACTACCTCAGTGAGCAGACACGAGCATTGCTAACAAGTGCACCATATGTCCACTTGAAACATGCTGATGCATATAAATATACACGGAACCTCTCCCCTGCTAGTCGGGCTATTTTGCTCTCTGGACCTGCTGAACCTTATCAACAAATGCTTGCCAAGGCTTTAGCTCACTACTTCGAAGCAAAATTGTTGCTGTTAGATATAACTGATTTTTCCCTTAAGATTCAGAGCAAATATGGCAGCGCAAATAAAGAATTTGCTTTTAAAAGGTCGACTTCAGAGTCCACTTTTGAACGACTGTCTGGTTTATTTGGATCATTCTCAATCCTTCCACAGAGGGAGGAGCAGAAAGGCACATTACGGAGGCAAAATAGCGGCGTGGATATCGGATCAAGAGGTGTAGAAGGATCTTCTAATCTTCCAAAGCTTCGTAGAAATGCATCTGCCACTGCTAATATCAGTAACCTCACCACACAGAGTAATACTACAAATCAAGCTCCTCTCAAGCGCACAAGCAGTTGGTCTTTTGATGAGAAACTTCTTATACAGTCTCTTTATAAGGTTCTCGCTCATGTGTCAAAAACAAGTCCTATCATTCTATATCTTCGAGATGTTGATTTCCTATTCAGATCACCAAGAATATATAACTTGTTTCAAAAAATGCTGAAGAAACTGTCTGGGTCAGTCCTGATCCTTGGTTCAAGGATTCTGGAACCAGAAAATGATTACAGGGAGATGGATGAGAGGCTTTCTGTTCTTTTCCCTTACACTATTGAAATAAGGCCTCCTGAAGATGAATTCCATCTAGTAAGGTGGAAGTCACAATTGGAGGACGACTTGAAAAAGATCCAGACTCAAGATAACAAAAACCACATCATGGAAGTTCTTTCTGCAAATGATCTTGAATGTGATGATCTGGATTCAATATGTGTTGCAGACACTATGGTTCTCAGTAACTACATTGAAGAGATTGTTGTATCTGCAATCTCTTATCATTTAATGAAAAATAAGGTTCTTGAATACAGTAATGAAAAGTTAATTATTTCTTCAAAGAGTTTGTCCCATGGATTAAGCATTTTCCAGGAAGGAAAATCAAAAGGCAAAGATGCGTCAAAATTGGAAGCACAGGCTGAAATATCAAAGGAATTGAGAGGGGAAGAGGCTAGTAGCTTAAAGCCAGAACCAAGAACAGAAACCGTATCTCCTAAAAACAAAAGTGGTGCAGAAGTAACAGCTCCAGTGGCAAAGACAGAGGGCGAAAGTTCAGTAACCCCAGCAAAAGCTCCAGAGGTTCCACCTGACAACGAGTTTGAGAAGCGCATAAGACCAGAAGTCATACCAGCCAATGAAATTGGTGTTACTTTTGCTGATATTGGTGCCTTGGATGAGATTAAAGAATCCCTTCAAGAACTAGTGATGCTCCCATTACGGAGACCAGACCTCTTCAATGGAGGCCTATTAAAGCCTTGCAGAGGTATTTTGCTATTCGGCCCACCTGGCACTGGGAAAACAATGCTAGCCAAGGCCATAGCCAAGGAAGCAGGAGCAAGCTTTATAAATGTATCAATGTCCACCATCACTTCTAAATGGTTTGGAGAAGATGAGAAGAACGTCCGAGCCTTGTTCACTCTGGCATCAAAAGTCTCCCCAACTATTATATTTGTAGATGAGGTTGATAGCATGCTTGGGCAAAGAACAAGAGTAGGAGAGCATGAAGCAATGAGGAAGATAAAAAATGAGTTCATGACCCATTGGGATGGGCTCTTGACTAAACCAAGCGAGTGCATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGACCTTGATGAAGCGATAATCCGTCGGTTTGAGAGGAGGATTATGGTAGGTTTACCGTCAGTTGAGAACAGGGAAATGATAATGAGAACCCTTTTGGACAAAGAAAAAGTGGTGGAAGGTCTCGACTTCAAGGAGCTTGCAGCTATGACAGAAGGATATACTGGCAGTGATCTTAAGAACTTGTGCACAACGGCTGCGTATCAACCAGTCAGAGAATTGATACAACAAGAAAGACTTAAGGATTTAGAGAAGAAACAAAAAAAGGAGGAAAGGAAGAGTTCAGGCGATACCCCAGACACAGAAGAAGGTAAAGCAGAAAGAGTCATTACTCTCAGGCCCTTAAACATGGAGGACTTTAGGCAGGCAAAGAACCAGGTGGCAGCAAGCTTTGCATCTGAGGGATCTATAATGGGTGAATTAACACAATGGAATGAGTTATATGGTGAAGGTGGTTCTAGAAAGAAGCAACAATTATCATATTTCCTTTGA 2514 42.32 MEQKSLLLSALGVGVGVGVGLGLASGQSVRKWTGSNPSSNSITAEIVEQEMLRKIVDGRESKVTFDEFPYYLSEQTRALLTSAPYVHLKHADAYKYTRNLSPASRAILLSGPAEPYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGSANKEFAFKRSTSESTFERLSGLFGSFSILPQREEQKGTLRRQNSGVDIGSRGVEGSSNLPKLRRNASATANISNLTTQSNTTNQAPLKRTSSWSFDEKLLIQSLYKVLAHVSKTSPIILYLRDVDFLFRSPRIYNLFQKMLKKLSGSVLILGSRILEPENDYREMDERLSVLFPYTIEIRPPEDEFHLVRWKSQLEDDLKKIQTQDNKNHIMEVLSANDLECDDLDSICVADTMVLSNYIEEIVVSAISYHLMKNKVLEYSNEKLIISSKSLSHGLSIFQEGKSKGKDASKLEAQAEISKELRGEEASSLKPEPRTETVSPKNKSGAEVTAPVAKTEGESSVTPAKAPEVPPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFNGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPSECILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMIMRTLLDKEKVVEGLDFKELAAMTEGYTGSDLKNLCTTAAYQPVRELIQQERLKDLEKKQKKEERKSSGDTPDTEEGKAERVITLRPLNMEDFRQAKNQVAASFASEGSIMGELTQWNELYGEGGSRKKQQLSYFL 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4175897 4180519 - Conep06aG0084400.1 Cone6ag0820 439704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0820 837 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0820 837 SMART AAA_5 558 695 IPR003593 GO:0016887(InterPro)
Cone6ag0820 837 MobiDBLite consensus disorder prediction 448 503 - -
Cone6ag0820 837 Gene3D - 521 805 IPR027417 -
Cone6ag0820 837 MobiDBLite consensus disorder prediction 184 210 - -
Cone6ag0820 837 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 521 696 - -
Cone6ag0820 837 Pfam AAA+ lid domain 716 759 IPR041569 -
Cone6ag0820 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 763 IPR027417 -
Cone6ag0820 837 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 36 836 IPR051701 GO:0005741(PANTHER)
Cone6ag0820 837 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0820 837 Coils Coil 747 767 - -
Cone6ag0820 837 MobiDBLite consensus disorder prediction 448 462 - -
Cone6ag0820 837 Gene3D - 694 799 - -
Cone6ag0820 837 MobiDBLite consensus disorder prediction 758 783 - -
Cone6ag0820 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 347 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0820 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1587 Cone-Chr5:11144781 Cone6ag0820 Cone-Chr6:4175897 1.69E-47 dispersed
Cone6ag0820 Cone-Chr6:4175897 Cone9ag1196 Cone-Chr9:8529606 3.37E-79 dispersed
Cone6ag1626 Cone-Chr6:12530362 Cone6ag0820 Cone-Chr6:4175897 7.78E-13 dispersed
Cone14ag0044 Cone-Chr14:290164 Cone6ag0820 Cone-Chr6:4175897 0 wgd
Cone15ag0049 Cone-Chr15:307190 Cone6ag0820 Cone-Chr6:4175897 0 wgd
Cone5ag0903 Cone-Chr5:3871261 Cone6ag0820 Cone-Chr6:4175897 0 wgd
Cone6ag0820 Cone-Chr6:4175897 Cone9ag0819 Cone-Chr9:3950168 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75