Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0822 ATGAATGGAAAAAAGGGTAGTTGTAGTAGTAGTAGTAGTAGTGTTGCGATTGAAATTCCTTCAGTTTCAAAACCGAAACAGCTGGAAGATGGCAAGAGTAATAATAACTCTGGCACTTGGGTTATTATTATCTCGGTTCAAGATTTCATACGCAGAGTCTGGGAATTTGGGAAGGAAGATAGCAATAGAGTAATATTCTCACTCAAAGTCGGCTTGGCCGTTCTTCTTGTCTCTTTGCTTATACTTTGCCAAGCACCTTATGATGTTTTCGGAAACAGCATTATCTGGTCTATCCTCACTGTTGCTATCATGTTCGAGTATACAGTCGGTGCAACATTTAACCGAGGATTCAACCGAGCACTTGGGAGCTTGCTTGCAGGACTCTTAGCCATTGCTGTTGCTCAAATAGCTATACAAACCGGCCGGGTGGCTGCGCCTGTTATAATTGGCATCAGCATCTTTATTATCGGAACTCTGACATCATTTATGAAATTATGGCCATCACTTGTTCCATATGAATACGGATTCCGCGTTATTCTTTTCACTTATTGTTTGATCATAGTTTCCGGACATAGAATGGGGAATCCGATAAAAACAGCTATGGATCGGCTTTATTCAATTGCTATTGGAGCTTTTATTGCAGTGATTGTTAATGTGCTTGTATTTCCGATATGGGCCGGCGAGCAATTACATAAGGAGCTTGTCAAAAGCTTCGAGTCTGTGGCTGACTCACTTGAAGAATGTGTTAAGAAATATTTAGAAGATGACGGATCACAGAACCCGGAATTCTCGAAAACGGTCATGGATGAGTTCCTGGACGAGCCGGCTTATAGAAAGTGCAAGGCCACCTTAAACTCCTCAGCAAAGCTCGAGTCATTGGCCAATTCGGCGAAATGGGAGCCGCCGCATGGAAGATTCCAGCACTTCTTCTATCCCTGGTCCGAGTACGTCAAAGTTGGAGCCGTTTTACGATATTGTGCTTATGAAGTTATGGCCCTTCATGGTGTTCTTCACTCTGAAATTCAGGCGCCTTATAATCTCCGAATTACATTCAAGTCCGAGATCGAAGAAGCGACGAACCAAGCAGCCGAGCTGGTACGTAGCTTGGGCAAAGACATAAGCAACATGAGACGAACGTTCAAGTCATCTCTGCTAAAGCGCGTCCACGGCTCAAGCGAGCGGCTCCAGCGAGCCATCGACATGCACTCTTATCTCCTTACATCCAATTACGACCACTGCTCTAACACACAGCCGCCGCCGCTGCCTAAGCTCTCTAAAACCCAGTCGACCAACATGTTCGACGTGTCGTCAAACCAATCTGCTGAGCTTGACAGTAATACTAACAGCCTCGAGAAATTCAACTCGGGAGAGTTCGGTTACAGTTACAATGACATGCTGGTGAGGAAACAGTCAAAACGACAGCATTCTTGGCCGTCTAGGGAGGTGGACAGTTTTGAAGAGGAAAGGGGATGTGATCACGTGGCAGGTTATTTGCCGAGGATGAGGGCGTTGGAAAGTACTACGGCTTTGTCTTTGGCTAATTTTACTTCTTTGCTCATTGAGTTTGTGGCTCGGCTCGATCATTTGGTTGAAGCCGTCGATGAGCTTTCTAAACTCGCTAAGTTTAAACGGGAGGGGCCTGTCAAAGATATTAAGATGCAGGCCGATGACAAGACTTTTGGTAATGAGATTCATCTATATGACATCGCAATAGTTGGAGGTGGAATGGTAGGCATGGCCTTAGCTTGCTCTTTAGCGAGCATGCCGTTGACTAGGCAGTTGACTGTTGCGATTATTGATAGCAATCCTGCACTGAAAAGTGGGACCCACATCAAGAAAGATGATCCCCCAGATCCAAGGGTCAGTACAGTCACACCAGCAACTATATCTCTCTTCAAAGATGTTGGTGCTTGGGAATATGTTGAACAGCATCGACATGCATATTTTGATAAAATGCAGGTTTGGGATTATACTGGCTTAGGATACACAAGATATAATGCAAGAGATGTTCACAAAGAAAATCTCGGGTGTGTGGTGGAGAATAAAGTGCTTCATGGTTCCTTATTAGCATGTATGCAGAATACGGATCTTCCAAAGACCATATATACTTCCAGATTAGCCTCACTGACCTTTGGTCCAAGCTCTTCATCAACATTGAATGAGCCACTGAATTTTTCAAAGTTGGAACTGAATGATGGCAGCAGCCTATACGCAAAGTTGGTGGTTGGTGCTGATGGTTCAAAATCACATGTTAGAAAATTAGCAGGGTTTAAAACAACAGGATGGAGCTACTCACAGAATGCAGTGATCTGTACAGTAGAACATTCTATACCAAACCATTGTGCTTGGCAACGGTTTCTCCCCTCCGGGCCCATTGCACTTTTACCAGTTGGTGATAATTTTAGCAACATAGTTTGGACGATGAACCCAGAAGAAGCTCTAAACCGAAAATCAATAACTGAGGAGGCTTTTGTGAATGACGTAAACTCTGCTTTGGATTATGGGTATGGCCCACATCCAAATTCAAGCTTGTTGGGAAATGGAAGTATCTTCTCTTGGATTAAAACGGATACCACATTATCTGCTGAAGAATGCTTTGAAATCCCTCCAAAAGTGGTCAGATTGGCATCCGATAGAATGGTTTTCCCTCTGTCTTTGATGCATGCTAATAACTACGTGTCAAAACGGGTAGCTTTAATCGGTGATGCAGCTCACACTGTTCACCCTTTGGCTGGCCAAGGGGTTAATTTGGGATTCGGAGATGCTTCTGCTCTTTCAAAAATCATTGAGGAGGGTGTTGCCCTAGGAACCGATATTGGAGAGGTATCATTGTTGGGGAAATTTGAAGCGGAGAGGAAACCGACTAATATTGCTATGATGGCAGTTCTGGATGGTGTTCAGAAGGCTTATTCGATTGATTTTGGACCGCTTAATACGATGATGATATCCTTTTATGGTGTTAGAAACCAAGATATTCGGTTGAATGGAACCTCCACTTACAAGTGCCTTCAGGTAGAGGCTAAAGCCTCCACTCTCTTCATCCGGCCAATGGTTCCTAGTCTCAGTGTATCCCATTTAGATAATGCTCTTTTGAGGGTCAGCCAAATTACAAAGAAGATCACTAAGGCAACCAACGCTAGCAGGGCTGAGGCCTTAAGGAGGGAAGGCAAGTCAACCCGTCCTCTTCCCAAAGAGCATTACGAGTTGGTATTTTCCAATCTTACGGAGACTGAGAGGGACTACCTACTGACGGATAATGACGTTCTACATGTAATGAATATCAAACTCCTTGATGCTGAGGAATAG 3306 44.13 MNGKKGSCSSSSSSVAIEIPSVSKPKQLEDGKSNNNSGTWVIIISVQDFIRRVWEFGKEDSNRVIFSLKVGLAVLLVSLLILCQAPYDVFGNSIIWSILTVAIMFEYTVGATFNRGFNRALGSLLAGLLAIAVAQIAIQTGRVAAPVIIGISIFIIGTLTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGHRMGNPIKTAMDRLYSIAIGAFIAVIVNVLVFPIWAGEQLHKELVKSFESVADSLEECVKKYLEDDGSQNPEFSKTVMDEFLDEPAYRKCKATLNSSAKLESLANSAKWEPPHGRFQHFFYPWSEYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRITFKSEIEEATNQAAELVRSLGKDISNMRRTFKSSLLKRVHGSSERLQRAIDMHSYLLTSNYDHCSNTQPPPLPKLSKTQSTNMFDVSSNQSAELDSNTNSLEKFNSGEFGYSYNDMLVRKQSKRQHSWPSREVDSFEEERGCDHVAGYLPRMRALESTTALSLANFTSLLIEFVARLDHLVEAVDELSKLAKFKREGPVKDIKMQADDKTFGNEIHLYDIAIVGGGMVGMALACSLASMPLTRQLTVAIIDSNPALKSGTHIKKDDPPDPRVSTVTPATISLFKDVGAWEYVEQHRHAYFDKMQVWDYTGLGYTRYNARDVHKENLGCVVENKVLHGSLLACMQNTDLPKTIYTSRLASLTFGPSSSSTLNEPLNFSKLELNDGSSLYAKLVVGADGSKSHVRKLAGFKTTGWSYSQNAVICTVEHSIPNHCAWQRFLPSGPIALLPVGDNFSNIVWTMNPEEALNRKSITEEAFVNDVNSALDYGYGPHPNSSLLGNGSIFSWIKTDTTLSAEECFEIPPKVVRLASDRMVFPLSLMHANNYVSKRVALIGDAAHTVHPLAGQGVNLGFGDASALSKIIEEGVALGTDIGEVSLLGKFEAERKPTNIAMMAVLDGVQKAYSIDFGPLNTMMISFYGVRNQDIRLNGTSTYKCLQVEAKASTLFIRPMVPSLSVSHLDNALLRVSQITKKITKATNASRAEALRREGKSTRPLPKEHYELVFSNLTETERDYLLTDNDVLHVMNIKLLDAEE 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4196410 4204023 + Conep06aG0084600.1 Cone6ag0822 439706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0822 1101 Hamap Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial [COQ6]. 553 1004 IPR000689 GO:0006744(InterPro)|GO:0106364(InterPro)
Cone6ag0822 1101 ProSitePatterns ubiH/COQ6 monooxygenase family signature. 908 921 IPR018168 -
Cone6ag0822 1101 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 909 925 - -
Cone6ag0822 1101 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 568 590 - -
Cone6ag0822 1101 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 894 909 - -
Cone6ag0822 1101 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 737 752 - -
Cone6ag0822 1101 SUPERFAMILY FAD/NAD(P)-binding domain 567 977 IPR036188 -
Cone6ag0822 1101 NCBIfam ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 568 979 IPR010971 GO:0006744(InterPro)|GO:0016705(InterPro)|GO:0050660(InterPro)
Cone6ag0822 1101 FunFam Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial 747 847 - -
Cone6ag0822 1101 Pfam FAD binding domain 734 832 IPR002938 GO:0071949(InterPro)
Cone6ag0822 1101 Pfam FAD binding domain 881 959 IPR002938 GO:0071949(InterPro)
Cone6ag0822 1101 Gene3D - 565 800 IPR036188 -
Cone6ag0822 1101 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 514 980 IPR051205 GO:0005739(PANTHER)|GO:0006744(PANTHER)|GO:0016120(PANTHER)|GO:0016123(PANTHER)|GO:0016491(PANTHER)
Cone6ag0822 1101 FunFam Ubiquinone biosynthesis monooxygenase COQ6 874 989 - -
Cone6ag0822 1101 Pfam Aluminium activated malate transporter 54 537 IPR020966 GO:0015743(InterPro)
Cone6ag0822 1101 Gene3D - 871 975 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0822 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0846 Cone-Chr19:6664209 Cone6ag0822 Cone-Chr6:4196410 9.38E-102 dispersed
Cone6ag0822 Cone-Chr6:4196410 Cone8ag0460 Cone-Chr8:2968179 4.04E-72 dispersed
Cone6ag0822 Cone-Chr6:4196410 Cone9ag0822 Cone-Chr9:3979252 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g68 . . . . . . . . . . Cma02g01415 . Car02g01185 . . . Cpe05g00367 . . . . . . . . . . . . . . . . Cone6ag0822 Cone9ag0822 . Csa05g00228 Chy09g01272 . . Blo19g00352 . . . . . . . Cmo02g01444 . . . . . . . Bhi12g00172 . . . . . . Cla01g00211 Cam01g0216 Cec01g0210 Cco01g0214 Clacu01g0211 Cmu01g0205 Cre09g2302 Lsi09g00199 . . Cme09g01815
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007264 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 0 36