Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0825 ATGGCTGGGAATTCAACAGCAGCGGGTGCCTGTCCAGCACCCATGAAAGCTACATCAAACGGCGCGTTTCAAGGAGACAATCCCCTTGATTATGCACTCCCTCTTATCATCTTACAGATTTGCCTTGTCGTCGTTCTCACACGTGTTCTAGCTTTCTTTCTCCGGCCGCTGAGACAGCCTCGTGTCATTGCTGAGATTGTTGGAGGTATATTGCTAGGCCCCTCAGCTCTAGGCCGGAACAAAACCTTCCTAAACAACGTTTTCCCGTCAAGAAGTCTAACAGTACTAGACACTCTAGCTAATCTGGGCCTCCTCTTCTTCCTCTTCCTAGTCGGGCTTGAACTGGACCTCAGTTCCCTCCGAAGAACCGGGAAAAAGGCCCTCAGCATAGCCGCAGCTGGAATCAGCCTCCCGTTCCTTATGGGAATCGGAACCTCTTATGTTTTACGAGCAACGATTTCAAAAGGTGTAGACAAAGCCCCATTCCTTGTTTTCATGGGTGTTGCTCTTTCCATAACTGCGTTCCCTGTCCTGGCCCGCATCTTAGCCGAGCTCAAGCTCCTAACAACCGACATAGGCCGGATGGCCATGTCAGCAGCGGCGGTTAATGACGTGGCCGCTTGGATCCTACTCGCTCTGGCTATCGCCTTATCCGGGAAGGACAGCTCTCCGCTTATTTCTCTCTGGGTCTTCTTGTGTGGAGCTGGGTTCGTGACCGCTTGCTTCTTTGTTTTCCCCCCCATGTTTAAATGGATGGCTCACCAGTGCCCGGAGGGTGAGCCGGTCAAGGAGCTGTATGTCTGTGCCATCTTGACTATGGTTCTGGCGGCTGGGTTCGTTACGGACACAATTGGGATTCACGCGTTGTTTGGGGCTTTTGTGGTGGGAGTGCTTGTACCGAAAGAAGGGCCGTTTGCTGGAGCATTGGTTGAGAAAGTTGAGGATCTTGTTTCAGGGCTTTTCCTTCCTTTGTACTTTGTTTCTAGCGGGCTTAAAACCGATGTGACCACCATTAAAGGGGCCCAATCTTGGGGTCTTCTTGTCCTCGTCATTGGTACAGCTTGTTTTGGGAAAATTGCCGGGACTGTCTCTGTTTCTCTTCTCTGTAAAGTGCCCTCTCAAGAGGCCATTGCTCTTGGGTTTCTGATGAATACTAAAGGGTTGGTAGAACTGATTGTCCTCAACATTGGTAAAGACAGAAAGGTGTTGAATGATCAAACATTTGCAATCATGGTTTTAATGGCGATATTCACGACGTTCATCACAACACCTTTAGTGATGGCTGTCTATAAGCCAGCTAAAAGAAGGAACGAAGTGTCTGATTACAAGCGCAGAACGATCGAGCAGAGAGAATCTAAATCCCATCTTCGTATCGTGGCATGTTTCCACACTATAAGAAACATCCCCGCCATGGTCAATCTGATTGAAGCTTCTCGTGGGACAGGGAAGAAAGAAGGTCTATGTGTCTACGCAATGCACTTAATGGAGCTAACAGAAAGACCCTCTGCCATCTTAATGGTCCACAAGGCGAGAAAAAACGGACTTCCCTTTTGGAATAAAGGGCCCAGAGATGCTTCCGACCAATTTGTTGTTGGTTTTGAGGCCTTTTTACAGCTCAGCAGAGTTTCAATCCGACCAATGACAGCCATTTCATCAATGTCTGATATGCATGAAGATATCTGCAATAGTGCGGAGGGAAAAAGAGCTACTGTGATAATCCTTCCGTTCCATAAACATCAGAGACTGGACGGGACTTTGGAAACTACTCGCGCTGAGTTCCGTTTGGTCAACAAGAAGGTTCTAGAACATGCTAGATGTTCGGTTGGAATCTTGGTTGACCGTGGACTCGGAGGTGGGATCCATGTCTCTGCAAGCAATGTTTCTTCGACTGTAACTGTGTTGTTCTTTGGTGGAAGAGATGATAGGGAAGCGCTTGCTTATGGTGCAAGAATGGCGGAGCATCCAGGTATAAAACTAATTGTGGTTAGGTTCTTGACGGGCCCGGATAAGATATCAGAATCAGCAGAGATTGTGAAAGAGAATAGCAATTTGGATCAGGACAAGAAGTTCTTGTCTGAATACAAGCAGGGGATTTTGAAGGACGAGTCTATTCGGTTCGAGGAGAGGAGGGTGAGCACTGGCACGGAAGTTGCTGAGGCGGTTAAGGAGTTTAGCAAGTGCAATTTGATATTGGCGGGAAGGATGCCAGAAAGTCAAGTGGTTGAAGAGCTGATGTATAGTCATCATCATGTGAAGGGGGAGTGTCCCGAGCTCGGGCCGATAGGGAACCTGTTGACTTCTCATGATCTAGTGATTTCTGCATCTGTATTGATCTTGCAACAGTTTCATTATCAGGAGATTCCGCGTTCTGTTTCGGGCTTGTCCAGGTCGGTCGTGTTGCCTAAGGAAGATCTCGAAGCGAGCTTATGA 2430 48.11 MAGNSTAAGACPAPMKATSNGAFQGDNPLDYALPLIILQICLVVVLTRVLAFFLRPLRQPRVIAEIVGGILLGPSALGRNKTFLNNVFPSRSLTVLDTLANLGLLFFLFLVGLELDLSSLRRTGKKALSIAAAGISLPFLMGIGTSYVLRATISKGVDKAPFLVFMGVALSITAFPVLARILAELKLLTTDIGRMAMSAAAVNDVAAWILLALAIALSGKDSSPLISLWVFLCGAGFVTACFFVFPPMFKWMAHQCPEGEPVKELYVCAILTMVLAAGFVTDTIGIHALFGAFVVGVLVPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTDVTTIKGAQSWGLLVLVIGTACFGKIAGTVSVSLLCKVPSQEAIALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFITTPLVMAVYKPAKRRNEVSDYKRRTIEQRESKSHLRIVACFHTIRNIPAMVNLIEASRGTGKKEGLCVYAMHLMELTERPSAILMVHKARKNGLPFWNKGPRDASDQFVVGFEAFLQLSRVSIRPMTAISSMSDMHEDICNSAEGKRATVIILPFHKHQRLDGTLETTRAEFRLVNKKVLEHARCSVGILVDRGLGGGIHVSASNVSSTVTVLFFGGRDDREALAYGARMAEHPGIKLIVVRFLTGPDKISESAEIVKENSNLDQDKKFLSEYKQGILKDESIRFEERRVSTGTEVAEAVKEFSKCNLILAGRMPESQVVEELMYSHHHVKGECPELGPIGNLLTSHDLVISASVLILQQFHYQEIPRSVSGLSRSVVLPKEDLEASL 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4213906 4216509 - Conep06aG0084900.1 Cone6ag0825 439709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0825 809 Gene3D - 35 440 IPR038770 -
Cone6ag0825 809 FunFam Cation/H(+) antiporter 15 35 437 - -
Cone6ag0825 809 Gene3D - 490 748 - -
Cone6ag0825 809 PANTHER CATION/H + ANTIPORTER 11 785 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cone6ag0825 809 Pfam Sodium/hydrogen exchanger family 47 426 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0825 K26731 - - mdm:103447323 1092.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0681 Cone-Chr15:3668569 Cone6ag0825 Cone-Chr6:4213906 1.91E-49 dispersed
Cone6ag0825 Cone-Chr6:4213906 Cone9ag0826 Cone-Chr9:4014052 0 dispersed
Cone6ag0824 Cone-Chr6:4210873 Cone6ag0825 Cone-Chr6:4213906 1.36E-40 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g74 . . . . . . . . . Cmo16g00620 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0825 . . . . Cme07g01599 . . . . . . . . . . . . Cma16g00569 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone6ag1271 . 11 821 Antiporter Super Family AT2G13620 68.4 0.0e+00 1120.9
Cone12ag0018 . 6 792 Antiporter Super Family AT2G13620 69.8 0.0e+00 1094.7
Cone8ag0012 . 1 231 Antiporter Super Family AT2G13620 56.9 2.1e-74 278.1
Cone10ag0300 . 76 831 Antiporter Super Family AT3G53720 69.4 4.5e-297 1017.7
Cone10ag0299 . 77 804 Antiporter Super Family AT3G53720 57.3 1.2e-228 790.4
Cone6ag0825 . 83 781 Antiporter Super Family AT3G53720 50.3 7.9e-185 644.8
Cone9ag0826 . 1 803 Antiporter Super Family AT5G41610 65.7 1.3e-299 1026.2
Cone6ag0825 . 1 807 Antiporter Super Family AT5G41610 65.4 1.6e-297 1019.2
Cone9ag0825 . 1 777 Antiporter Super Family AT5G41610 65.3 7.3e-290 993.8
Cone14ag0671 . 1 783 Antiporter Super Family AT5G41610 62.9 9.2e-277 950.3
Cone10ag0300 . 1 806 Antiporter Super Family AT5G41610 51.4 1.3e-209 727.2
Cone15ag0680 . 1 348 Antiporter Super Family AT5G41610 52.2 3.9e-102 370.2
Cone15ag0681 . 1 146 Antiporter Super Family AT5G41610 52.7 2.2e-36 151.8
Cone6ag0825 . 11 808 Antiporter Super Family AT4G23700 65.1 3.9e-283 971.5
Cone9ag0826 . 11 808 Antiporter Super Family AT4G23700 64.8 5.6e-282 967.6
Cone9ag0825 . 13 788 Antiporter Super Family AT4G23700 60.8 2.9e-270 928.7
Cone14ag0671 . 8 804 Antiporter Super Family AT4G23700 58.3 4.5e-263 904.8
Cone15ag0680 . 1 343 Antiporter Super Family AT4G23700 52.2 8.3e-100 362.5
Cone15ag0681 . 9 146 Antiporter Super Family AT4G23700 56.6 3.1e-38 157.9
Cone14ag0671 . 5 801 Antiporter Super Family AT3G17630 71.3 0.0e+00 1092.0
Cone6ag0825 . 4 782 Antiporter Super Family AT3G17630 65.3 1.4e-282 969.5
Cone9ag0825 . 13 771 Antiporter Super Family AT3G17630 66.3 1.8e-280 962.6
Cone9ag0826 . 4 782 Antiporter Super Family AT3G17630 64.1 2.0e-279 959.1
Cone10ag0300 . 8 804 Antiporter Super Family AT3G17630 51.4 8.4e-206 714.5
Cone15ag0680 . 1 354 Antiporter Super Family AT3G17630 62.9 2.0e-127 454.1
Cone6ag0825 . 1 782 Antiporter Super Family AT1G64170 58.6 6.4e-246 847.8
Cone9ag0826 . 11 782 Antiporter Super Family AT1G64170 59.1 4.2e-245 845.1
Cone9ag0825 . 14 784 Antiporter Super Family AT1G64170 55.5 6.1e-228 788.1
Cone14ag0671 . 7 782 Antiporter Super Family AT1G64170 52.9 3.2e-221 765.8
Cone6ag1271 . 11 821 Antiporter Super Family AT2G13620 68.4 0.0e+00 1120.9
Cone12ag0018 . 6 792 Antiporter Super Family AT2G13620 69.8 0.0e+00 1094.7
Cone8ag0012 . 1 231 Antiporter Super Family AT2G13620 56.9 2.1e-74 278.1
Cone6ag0825 . 1 782 Antiporter Super Family AT1G64170 58.6 6.4e-246 847.8
Cone9ag0826 . 11 782 Antiporter Super Family AT1G64170 59.1 4.2e-245 845.1
Cone9ag0825 . 14 784 Antiporter Super Family AT1G64170 55.5 6.1e-228 788.1
Cone14ag0671 . 7 782 Antiporter Super Family AT1G64170 52.9 3.2e-221 765.8
Cone6ag0825 . 11 808 Antiporter Super Family AT4G23700 65.1 3.9e-283 971.5
Cone9ag0826 . 11 808 Antiporter Super Family AT4G23700 64.8 5.6e-282 967.6
Cone9ag0825 . 13 788 Antiporter Super Family AT4G23700 60.8 2.9e-270 928.7
Cone14ag0671 . 8 804 Antiporter Super Family AT4G23700 58.3 4.5e-263 904.8
Cone15ag0680 . 1 343 Antiporter Super Family AT4G23700 52.2 8.3e-100 362.5
Cone15ag0681 . 9 146 Antiporter Super Family AT4G23700 56.6 3.1e-38 157.9
Cone9ag0826 . 1 803 Antiporter Super Family AT5G41610 65.7 1.3e-299 1026.2
Cone6ag0825 . 1 807 Antiporter Super Family AT5G41610 65.4 1.6e-297 1019.2
Cone9ag0825 . 1 777 Antiporter Super Family AT5G41610 65.3 7.3e-290 993.8
Cone14ag0671 . 1 783 Antiporter Super Family AT5G41610 62.9 9.2e-277 950.3
Cone10ag0300 . 1 806 Antiporter Super Family AT5G41610 51.4 1.3e-209 727.2
Cone15ag0680 . 1 348 Antiporter Super Family AT5G41610 52.2 3.9e-102 370.2
Cone15ag0681 . 1 146 Antiporter Super Family AT5G41610 52.7 2.2e-36 151.8
Cone14ag0671 . 5 801 Antiporter Super Family AT3G17630 71.3 0.0e+00 1092.0
Cone6ag0825 . 4 782 Antiporter Super Family AT3G17630 65.3 1.4e-282 969.5
Cone9ag0825 . 13 771 Antiporter Super Family AT3G17630 66.3 1.8e-280 962.6
Cone9ag0826 . 4 782 Antiporter Super Family AT3G17630 64.1 2.0e-279 959.1
Cone10ag0300 . 8 804 Antiporter Super Family AT3G17630 51.4 8.4e-206 714.5
Cone15ag0680 . 1 354 Antiporter Super Family AT3G17630 62.9 2.0e-127 454.1
Cone10ag0300 . 76 831 Antiporter Super Family AT3G53720 69.4 4.5e-297 1017.7
Cone10ag0299 . 77 804 Antiporter Super Family AT3G53720 57.3 1.2e-228 790.4
Cone6ag0825 . 83 781 Antiporter Super Family AT3G53720 50.3 7.9e-185 644.8
Cone20ag1063 . 36 798 Antiporter Super Family AT3G52080 51.2 1.7e-214 743.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111