Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0828 ATGGAAGCTTCTCCAGCTCTGTCCCGCATAGGCTTAGCCGGCCTCGCCGTCATGGGCCAAAACCTAGCCCTCAACGTCGCCGAGAAAGGCTTCCCTATCTCCGTTTACAATCGCTCCATGAACAAGGTCGACGAGACCGTAGATCGGGCTCACAGAGAAGGCGACCTTCCATTAACAGGTCACTACAACCCTCGCGACTTCGTTCTCTCCATCCAACGGCCCAGATCCGTCATAATTCTGGTCAAAGCTGGTTCTCCTGTTGACCAGACTATCTCCGCCTTAACGGAATACTTGGAACCCGGAGACGCCATAATCGACGGTGGTAACGAGTGGTACGAGAACACCGAACGCAGAATCGCTCAAGTCACCAACCAAGGACTTCTCTACCTCGGCATGGGCGTATCTGGCGGAGAAGAAGGTGCTCGTAACGGACCTTCTTTGATGCCTGGAGGATCTTTTCAAGCTTACTCTAATGTCGAAGATATTCTCAGAAAAGTAGCCGCTCAAGTCGAAGACGGTCCTTGTGTTACCTACGTCGGTGAAGGAGGCTCAGGTAACTTCGTTAAAATGGTCCATAATGGTATCGAATATGGAGATATGCAGTTGATTTCAGAAGCCTATGACGTTCTGAAGAACGTAGGCGGTCTATCAAACTTCGAGCTTTCCGATATTTTCTCGGATTGGAACAGGGGAGAGCTGGAAAGCTTTTTAATTGAAATCACGGCTGATATATTCAAGGTCAAGGATGAGTATGACGATGGCTACTTAGTGGACAAGATTCTGGATAAGACAGGCATGAAGGGGACGGGAAAATGGACGGTTCAACAGGCGGCAGAGCTTTCTGTGGCGGCTCCAACGATAGCTGCCTCTTTAGACTGCCGTTACTTGAGTGGATTGAAGGAGGAGAGAGAGAATGCATCTGAGGTTTTGAAACAAGCTGGGTTAAAGGAGGAAGTGGGATCAGTGAGAAGTGGGATTGATAAGAAGAAGTTGATTGATGATGTGAGGCAAGCTTTATATGCTTCCAAGATATGCAGCTATGCTCAAGGAATGAACTTATTGAAGGCTAAGAGTGTGGAGAAAGGTTGGGCCTTGAACATGGGGGAATTGGCTAGGATCTGGAAAGGTGGGTGTATTATAAGAGCAGTGTTCTTGGATAGAATTAAGAAGGCTTATCAGAGAAATCCAGGTTTGGCTAATTTGATTGTCGATCCCGATTTTGCAAAGGAGATGGTTCAGAGGCAAGCTGCTTGGAGGAGAGTGGTTGGGTTGGCTATAACAGCCGGGATAAGCACTCCTGGAATGTGTGCTAGTCTTGCTTATTTCGATACCTATAGGCGGGCCCGGCTTCCGGCTAATCTTGTTCAGGCCCAGAGAGACTTGTTTGGTGCCCATACATATGAGCGGGTGGATCGGCCAGGTTCGTATCATACAGAATGGACCAAGCTTGCTCGGGGCAGTGGGGCTGGTGTTACAGGAGTTGGTGCTCTCATTTGA 1497 48.83 MEASPALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRSMNKVDETVDRAHREGDLPLTGHYNPRDFVLSIQRPRSVIILVKAGSPVDQTISALTEYLEPGDAIIDGGNEWYENTERRIAQVTNQGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYSNVEDILRKVAAQVEDGPCVTYVGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNFELSDIFSDWNRGELESFLIEITADIFKVKDEYDDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERENASEVLKQAGLKEEVGSVRSGIDKKKLIDDVRQALYASKICSYAQGMNLLKAKSVEKGWALNMGELARIWKGGCIIRAVFLDRIKKAYQRNPGLANLIVDPDFAKEMVQRQAAWRRVVGLAITAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGSYHTEWTKLARGSGAGVTGVGALI 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4238018 4239940 - Conep06aG0085400.1 Cone6ag0828 439712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0828 498 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 187 448 - -
Cone6ag0828 498 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 182 IPR036291 -
Cone6ag0828 498 SMART 6PGD_2 185 481 IPR006114 GO:0004616(InterPro)|GO:0006098(InterPro)
Cone6ag0828 498 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 9 179 IPR006115 GO:0050661(InterPro)
Cone6ag0828 498 Coils Coil 296 316 - -
Cone6ag0828 498 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 185 480 IPR006114 GO:0004616(InterPro)|GO:0006098(InterPro)
Cone6ag0828 498 PRINTS 6-phosphogluconate dehydrogenase signature 256 283 IPR006183 GO:0004616(InterPro)
Cone6ag0828 498 PRINTS 6-phosphogluconate dehydrogenase signature 8 31 IPR006183 GO:0004616(InterPro)
Cone6ag0828 498 PRINTS 6-phosphogluconate dehydrogenase signature 174 202 IPR006183 GO:0004616(InterPro)
Cone6ag0828 498 PRINTS 6-phosphogluconate dehydrogenase signature 370 392 IPR006183 GO:0004616(InterPro)
Cone6ag0828 498 PRINTS 6-phosphogluconate dehydrogenase signature 126 151 IPR006183 GO:0004616(InterPro)
Cone6ag0828 498 PRINTS 6-phosphogluconate dehydrogenase signature 73 102 IPR006183 GO:0004616(InterPro)
Cone6ag0828 498 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 6 186 - -
Cone6ag0828 498 Gene3D - 2 186 - -
Cone6ag0828 498 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 449 482 - -
Cone6ag0828 498 NCBIfam decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 10 481 IPR006113 GO:0004616(InterPro)|GO:0006098(InterPro)
Cone6ag0828 498 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 183 482 IPR008927 -
Cone6ag0828 498 PIRSF 6PGD 3 487 IPR006113 GO:0004616(InterPro)|GO:0006098(InterPro)
Cone6ag0828 498 Gene3D - 187 448 IPR013328 -
Cone6ag0828 498 Gene3D - 449 482 - -
Cone6ag0828 498 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 8 482 IPR006183 GO:0004616(InterPro)|GO:0005829(PANTHER)|GO:0008114(PANTHER)|GO:0009051(PANTHER)|GO:0046177(PANTHER)|GO:0050661(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0828 K00033 - - csv:101206171 878.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0340 Cone-Chr11:1651926 Cone6ag0828 Cone-Chr6:4238018 4.22E-268 dispersed
Cone18ag1161 Cone-Chr18:8348248 Cone6ag0828 Cone-Chr6:4238018 7.32E-269 dispersed
Cone6ag0828 Cone-Chr6:4238018 Cone9ag0828 Cone-Chr9:4049910 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0828 Cone9ag0828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001018 5 3 4 3 3 2 0 2 2 2 2 2 4 2 2 5 2 4 5 2 2 2 4 3 2 2 3 5 3 1 83