Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0830 ATGGATCATTCTTCTGGGGCAACCAGTAATCCTAATCAAGCGGTTGAAGTTACAAAAGACAAGAACGGAATCGACCAGGTGCTTCTTCGGACCTCTCGAGGGGCTTCTGCACGGGTTAGTTTGCATGGAGGCCAGGTTCTTTCTTGGAAAACCGATCGAAACGAAGAATTGTTATTCACTAGCAGTAAGGCAATCTTTAAACCACCAAAAGCTGTCAGAGGAGGGATTCCAATCTGCTTCCCACAGTTTGGAACCCGTGGAAACTTGGAGCAACACGGATTTGCTCGGAACAAGACTTGGGTTATTGAAGATAATCCTCCACCTTTACTTACTAGTACTGAACCCAATAGCAAGTCTCACATTGATTTGCTACTCAAACCTTCTGATGATGATCTTAAAATTTGGCCTCATAGATTTGAATTCAGGCTAAGGGTCTCGTTGGCAGCAGATGGATGTCTTACTCTAACATCTCGAATCAGGAACATCAATTGCAAGCCATTCAGTTTCTCGATCGCGTATCATACATACTTCTCTGTTTCTGATATCAGTGAAGTGAGGGTTGAGGGGCTTGAAACTTTAGACTATCTGGACAACCTATGCGAAAGACAGCGGTTCACAGAACAAGGAGATGCCTTAACATTTGAATCTGAGGTGGATCGGGTGTATCTAAGTTCGTCCGATATGATAGCGGTTTTTGATCATGAAAGGAAGAGGACTTTCATCATCAGAAAGGAAGGTCTTCCTGACGTCGTGGTGTGGAATCCATGGGAGAAGAAAGCTAGAGCGACAGTCGATTTCGGGGACGAAGAGTACAAACAAATGCTCAGTGTGGGGGCTGCAATCGAGAAACCGATTAACTTGAAGCCGGGCGAGGAATGGACCGGCCATTTGGAACTGTCTGTAGTTCCATTTACTTGA 918 44.99 MDHSSGATSNPNQAVEVTKDKNGIDQVLLRTSRGASARVSLHGGQVLSWKTDRNEELLFTSSKAIFKPPKAVRGGIPICFPQFGTRGNLEQHGFARNKTWVIEDNPPPLLTSTEPNSKSHIDLLLKPSDDDLKIWPHRFEFRLRVSLAADGCLTLTSRIRNINCKPFSFSIAYHTYFSVSDISEVRVEGLETLDYLDNLCERQRFTEQGDALTFESEVDRVYLSSSDMIAVFDHERKRTFIIRKEGLPDVVVWNPWEKKARATVDFGDEEYKQMLSVGAAIEKPINLKPGEEWTGHLELSVVPFT 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4251309 4253816 + Conep06aG0085600.1 Cone6ag0830 439714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0830 305 Gene3D - 20 302 IPR014718 GO:0030246(InterPro)
Cone6ag0830 305 MobiDBLite consensus disorder prediction 1 21 - -
Cone6ag0830 305 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 15 303 - GO:0005737(PANTHER)|GO:0047938(PANTHER)
Cone6ag0830 305 Pfam Aldose 1-epimerase 26 299 IPR008183 GO:0005975(InterPro)|GO:0016853(InterPro)
Cone6ag0830 305 CDD D-hex-6-P-epi_like 31 300 IPR025532 -
Cone6ag0830 305 PIRSF PHexose_mutarotase 3 303 IPR025532 -
Cone6ag0830 305 SUPERFAMILY Galactose mutarotase-like 20 299 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cone6ag0830 305 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0830 K01792 - - rcu:8287725 496.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1088 Cone-Chr4:9433449 Cone6ag0830 Cone-Chr6:4251309 1.26E-132 dispersed
Cone6ag0830 Cone-Chr6:4251309 Cone7ag1040 Cone-Chr7:7995702 6.46E-29 dispersed
Cone11ag0472 Cone-Chr11:2383747 Cone6ag0830 Cone-Chr6:4251309 1.29E-78 wgd
Cone18ag1038 Cone-Chr18:7650385 Cone6ag0830 Cone-Chr6:4251309 2.88E-164 wgd
Cone6ag0830 Cone-Chr6:4251309 Cone9ag0829 Cone-Chr9:4051816 8.95E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g96 . . . . . . . . Cmo06g01064 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0830 . . . . . . . . . . . . . . . . Cma06g01037 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000273 4 7 4 5 2 4 5 4 4 4 4 4 6 4 5 6 4 8 6 4 4 4 4 4 4 4 4 15 8 4 149