Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0833 ATGGGGAAGATGAATCTGGCTTTGTGGATGACGATGGCGATAAGCTGCTTTCTAATTGGACCAGCTTTAGGACTGACGCATATCGTCGGAGGAAGACACGGATGGACGCTCCCCGATAACCAGTCCTTCTTCGACGAGTGGGCCAGGCCGAGAACCTTTGGTGTTGGTGATAGACTCGTGTTTCCGTACAGGCCGGCATCCAACAACATCGTGCAGGTAAATAGGAAAGGGTATGTAGAATGCAGCAGAGATGGTTTAACCAACATGTACTTTCTTGGACCAACAATCATTGAACTCCATAAAACAGGAGATTATTACTACTATTCTGGGATTGGAAAGCATTGTGAGGTGGGTCAAAAGCTCCACATTAGAGTCGGTCGCGCTCCGGGATCATCCGGCTCAGACCCGCTTCCGTTCAAACTCAATAACCCTAAATTGCGTGGGACCATCCATCTTTCTGTTGCTGGTTCTGGTGGGCCCGTGTCCGCTCCGACACCGGTCAGTGCTCCCTCCGCCGCTCCAAAACTCGGAATGTTCTCGGCTGCTACTATTTTCACCGGGTTTTTGCTCCTTGTTCTTATATGA 585 50.09 MGKMNLALWMTMAISCFLIGPALGLTHIVGGRHGWTLPDNQSFFDEWARPRTFGVGDRLVFPYRPASNNIVQVNRKGYVECSRDGLTNMYFLGPTIIELHKTGDYYYYSGIGKHCEVGQKLHIRVGRAPGSSGSDPLPFKLNNPKLRGTIHLSVAGSGGPVSAPTPVSAPSAAPKLGMFSAATIFTGFLLLVLI 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4264025 4264697 - Conep06aG0085900.1 Cone6ag0833 439717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0833 194 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Cone6ag0833 194 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Cone6ag0833 194 Gene3D - 25 135 IPR008972 -
Cone6ag0833 194 PANTHER BLUE COPPER PROTEIN 17 142 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cone6ag0833 194 ProSiteProfiles Phytocyanin domain profile. 25 127 IPR003245 GO:0009055(InterPro)
Cone6ag0833 194 FunFam Cupredoxin superfamily protein 24 131 - -
Cone6ag0833 194 Pfam Plastocyanin-like domain 35 119 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0833 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0833 Cone-Chr6:4264025 Cone9ag0832 Cone-Chr9:4071452 7.45E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g100 Blo02g01139 Blo03g00241 . Bda08g00485 Bpe05g00679 . . . . Cmo16g00610 . . . . . . . . . . . . . . Cla07g01409 Cam07g1509 Cec07g1606 Cco07g1564 Clacu07g1499 Cmu07g1469 Cre07g1846 . . Cone6ag0833 Cone9ag0832 . . . Cme07g01585 . . . . . . Bma05g00852 . . . . . Cma16g00561 . . . . . . . . . . . . . . . . . . . Csa04g00638 Chy07g01173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007925 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36