Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0838 ATGACTAAACGCCAGTTTAGGGATTCTATAAAGTCATTTTTTGGTAGACATATTGATCCTGAGAAAGATGAGCAGCTAAAAGGAACTAAACAAGATGTCGAGGACAAAGTGAATAAAATCTTAAAGCTTATAAAAGAGGAAGATTTTGAGGAGAAAGATGGTCTCGCACCAGAAAACTCCAAAAAACAACCCATTGCTGAACTGATTCAGGATTTCCACAAACACTACCAGGCACTCTATGCACAATATGATCATCTAACTGGAGAGCTAAGAAAAAAAGTTCAAGGCAAACAAGAGAAGGAGATCTCTTCATCCAGCTCGGACTCGGATTCAGATTATACTTCAAAGGAGAAAGGCACTAAAAATGGACAGGTGGCAAGAGATTTCGAGCAAGAACTTGAAGCAGTGCATCTTGAAATAGCTGACCTAAAAGGGAAGTTGACTTCAACATGTGAGGAAAAGGAAGCTTTGAACTCGGAACATGTCACAACTGTAAGTAAGTTGCGAGAAGCAGAGAAGATCATAGGAGATTTAAAGGAGGAAGGTGAAACCTTGGCTATTGAAAAAACAACATTTCTGGTTGAAATTGAAGAATTGAATAAGAAATTGAATACTGCTGGTAGCATAGAAACTGAACTGAATGGAAGATTGGATAATATTGAAATGGAGAGAGATAATTTGATCAAGGCGAAAGATGCTGCTCTGAAGCAAATTGAGGAGAGAGAAAAAGATACAGAAGAGTTAAAAGCCATAGCTGATCTGTTGAAAGGAGAAAAATTGGTCCTTGAACAAGAACTAGAAGCTTTTAGAGAAGAAATTTCCGACATGAAGCAGAAAACCGACTCTCTGGAACAGAAGGTGTCAGATTTGATGCATGATCTTGAAGCTGATGAGGGAAAGAATCAATCTCTAAACCAGAAAATTTCAGAGATTACAACTGAAATTCAGCAGGAACAGAACATGAACCAAAAACTTGTGTCTGAAATTAATCAGTTGAAGGAGAACATGGGTCAAAGGGAGAGGGAATTTTCAACTCTTTCTGAGCAACATGAAATGCACAAAACTGAATCATCAGATCTAGTAAAGACACTAGAGGAGGAAGTGAGGGGCCTGAAACTGGAGCTGGAATCATTGCAAGCCCAGAAAAGAGAATCAGATGAGCAGCTCGAGAGAAAAGCAGTTGAAGCAAAAGAACAAGGTGAGGTTAATATAAGACTAGAAGAACAAATTTCAGAACTTGGGATTTGGTCTGAAAAGAGAGAGAATGAACTTTTGACTCTTGAAAGGAAACTTGCTGAAAACAAGAATGAATCATCTACAGAGATGGAGAAAATGACAGCTCTGATCAACAATATGTTAGCAGACATGGATTCTCTACGTGCTGAGAAAACTGAACTGGAAGAAGAGATAAATAGTAGAAGTGAAGAAGCGTCGATTCAAGTCAAGCGCTTGACAGATGAGGTGAATACATTGCAGCAGAAGTTAGAATTCCAGGAGAACCAGAAAAATGAAGTGGAGGTCCAACTTGAGACTGCTTTGAAAAAGATTGAAGAGGAAGAAAAATTTACAGAAGAAATAAAAGCCATGTCTGAGCAGCTGAGAGGTGAAAATGCGACACTTGTGCAGGAACAGGAATCTGTTAGAGGGGAGATTTCCAGTATGAAGCAACAAATCGAGGCTGCAGAAAAGGAAGTGTCAGATTTAGGGAATACTTTGGAAGCGGCTGAGGGAGAGAATAGATCTCTAACCTCAATAACTTTGGAGATTACTAATGAAATACAGAGGGCACAGAGAGAGAAAGAAGAACTCGAGGCTGAATTGAACCAACTGAAGGAGAATATGGGTCATAAGGAGAGGGAATTTTCTATTCTTGCTGAAAAGCATGACTTGCACACAAACGAATCATCGACTAGAGTAAAGTTACTTGAGGCACAAGTAACGGGCCTTCAACTGGAATTACAAACCCAGAGAAAAGATTCAGAAGAGCAGCTTGAGAGAAAAGCAGCTGAAGCAAAACAACTGGGTGAGGAAAATTCAAGTCTCCAAGACAAAGTTTCAGAACTTGAAGTCTTATCGGAAAATAGAGAGAATGAAATTTCAACTCTCAAGAAGAAACTTAAGGAAGCTGAGAATGAATTTTCCTCAAGAATAGAGAATCTAACGCTTCAGATCAACAGTCTGTTAGCAGATGTTGATTCTCTACGTGCTCAGAAAAGTGAACTTGAAGAAAAGATAATATGCATAAGTGAAGAAGCAGCAACTCAAATCACAGGTTTGACAGATCAAGTGAATTCATTTCAGCAGCAATTAGAATCCCAGCTGACCGAGAAAACTGAACTGGAGGCACAGCTTGAGGAAAAAACTCGAGAAATTTCTGAATATGTACTTCAGGTTCAAGGATTGAAAGAAAAGATAACAAGCAAGGCTTTGGATCATGATAAACTTATGGAAGAGAAAGAAAGTTTAGCAGTGCAGATTAAGGATCTGGGATTGGAAGTAGAGTCTATAAGGAGCCAGAAAAACGAACTTGAAGAGCAGATAAAAGCTGAAATCATCAAGCAAGGTCAGATCAGAGAGGAAAATGAGGAGCTAGAGAACAAAATTTTTGAATTGGAGCATACTGTGAAAGATAGAGGGATTGAGTTCTCTGCTCTCCATGAGAAACATGTAAATGGACAGAGTGAAGCTTCTGCTCAAAAAACGGCCTTAGAAGTACAGGTCAACAATCTGCGAGATGAGTTGGATTCTTTACAGGCAAAAAAGAAAGAAATCGAGTCGCAGTTTGAAAGAGAGAAAGAAGAGCTCTTAGAAAAATTGAAGGAACAAGAAGCTGCATACAATAACTTGGAGGAGGAATATAAAAAGATTGAAGTTTGTTTTCAGGAATGCAGAGAAGATCTTGAAATTACGGAAAGGAAAATGGAAGAAATGACAAATGAGTTGCATGCAATCATCGAATCAAAAGATGAGAAGGTGTCTGATCTAGAACTAACAGTTGAAGATATGAAAAGAGATCTTGAAGAAAAAGGAGATGAACTCGGAACATTGCTCGAAAGTGTACGCACAATTGAAGTGAAGCTCCGTTTATCAAACCAGAAGTTACGGGTCACGGAACAATTGCTGACGGAAAAGGAAGAGATCTTCAAAAAAAAAGAATTGAAGTTTCAAGAGGAACTGAGATTGCTCGAGGAAAGAATTACTGCTAACAATGAAGCTCATCAAAGGACAGTTTCTGTTATTGTAGAGAATATAAACAAAACCTTCTCCAGACTGGAATCTATTGTACATAAATTTGAAGAAGACTACACAAAACACGAGAAATGTGTTGTGGAGACATCAAACGAGGTTCAAGTTGCAAAAAATTGGGTAGGAAAGATAAAGACTGAAAAAGAAGAGCTGGAAAAAGTGGTAGCTGATCTAGTTGAGAAACTGGAGGATAAGAAAGGGAGAGAGTTAGTGTTAAAGGAGCAGGTTAAGAAGTTGGAGGTAAAGGCTGGGAGTGAAGAATCGGAGAAGGAGAGATTGGTTAAAGAAGTTAACATGCTCAAGAAGAGGCTCGGAGAAGTGGAGAAGACAATGGAAGAGAAGACTGAGGGGATGTTGGGTTTGGGAGAGGAGAAGAGGGAAGCTATTAGGCAGCTGTGTTTGTGGATTGATTATCATAGGAGCCGATATGATTATCTCAAGGAAATTCTCTTGAAGCTTAATGTTAGAGGTCAAAGGGTGAGCTCCTAG 3735 38.98 MTKRQFRDSIKSFFGRHIDPEKDEQLKGTKQDVEDKVNKILKLIKEEDFEEKDGLAPENSKKQPIAELIQDFHKHYQALYAQYDHLTGELRKKVQGKQEKEISSSSSDSDSDYTSKEKGTKNGQVARDFEQELEAVHLEIADLKGKLTSTCEEKEALNSEHVTTVSKLREAEKIIGDLKEEGETLAIEKTTFLVEIEELNKKLNTAGSIETELNGRLDNIEMERDNLIKAKDAALKQIEEREKDTEELKAIADLLKGEKLVLEQELEAFREEISDMKQKTDSLEQKVSDLMHDLEADEGKNQSLNQKISEITTEIQQEQNMNQKLVSEINQLKENMGQREREFSTLSEQHEMHKTESSDLVKTLEEEVRGLKLELESLQAQKRESDEQLERKAVEAKEQGEVNIRLEEQISELGIWSEKRENELLTLERKLAENKNESSTEMEKMTALINNMLADMDSLRAEKTELEEEINSRSEEASIQVKRLTDEVNTLQQKLEFQENQKNEVEVQLETALKKIEEEEKFTEEIKAMSEQLRGENATLVQEQESVRGEISSMKQQIEAAEKEVSDLGNTLEAAEGENRSLTSITLEITNEIQRAQREKEELEAELNQLKENMGHKEREFSILAEKHDLHTNESSTRVKLLEAQVTGLQLELQTQRKDSEEQLERKAAEAKQLGEENSSLQDKVSELEVLSENRENEISTLKKKLKEAENEFSSRIENLTLQINSLLADVDSLRAQKSELEEKIICISEEAATQITGLTDQVNSFQQQLESQLTEKTELEAQLEEKTREISEYVLQVQGLKEKITSKALDHDKLMEEKESLAVQIKDLGLEVESIRSQKNELEEQIKAEIIKQGQIREENEELENKIFELEHTVKDRGIEFSALHEKHVNGQSEASAQKTALEVQVNNLRDELDSLQAKKKEIESQFEREKEELLEKLKEQEAAYNNLEEEYKKIEVCFQECREDLEITERKMEEMTNELHAIIESKDEKVSDLELTVEDMKRDLEEKGDELGTLLESVRTIEVKLRLSNQKLRVTEQLLTEKEEIFKKKELKFQEELRLLEERITANNEAHQRTVSVIVENINKTFSRLESIVHKFEEDYTKHEKCVVETSNEVQVAKNWVGKIKTEKEELEKVVADLVEKLEDKKGRELVLKEQVKKLEVKAGSEESEKERLVKEVNMLKKRLGEVEKTMEEKTEGMLGLGEEKREAIRQLCLWIDYHRSRYDYLKEILLKLNVRGQRVSS 1244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4280139 4286005 + Conep06aG0086400.1 Cone6ag0838 439722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0838 1244 Coils Coil 217 248 - -
Cone6ag0838 1244 Coils Coil 252 349 - -
Cone6ag0838 1244 Coils Coil 1158 1192 - -
Cone6ag0838 1244 Gene3D - 269 400 - -
Cone6ag0838 1244 Coils Coil 1123 1150 - -
Cone6ag0838 1244 MobiDBLite consensus disorder prediction 92 124 - -
Cone6ag0838 1244 Coils Coil 586 627 - -
Cone6ag0838 1244 Coils Coil 417 437 - -
Cone6ag0838 1244 Coils Coil 442 522 - -
Cone6ag0838 1244 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779(InterPro)
Cone6ag0838 1244 Coils Coil 812 874 - -
Cone6ag0838 1244 Coils Coil 354 399 - -
Cone6ag0838 1244 Coils Coil 126 160 - -
Cone6ag0838 1244 Coils Coil 763 804 - -
Cone6ag0838 1244 PANTHER COP1-INTERACTIVE PROTEIN 1 510 1242 - -
Cone6ag0838 1244 Coils Coil 544 578 - -
Cone6ag0838 1244 Coils Coil 168 188 - -
Cone6ag0838 1244 Pfam KIP1-like protein 14 84 IPR011684 GO:0003779(InterPro)
Cone6ag0838 1244 Coils Coil 893 1012 - -
Cone6ag0838 1244 Coils Coil 639 751 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0838 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0838 Cone-Chr6:4280139 Cone9ag0835 Cone-Chr9:4086861 6.12E-210 dispersed
Cone6ag0837 Cone-Chr6:4275936 Cone6ag0838 Cone-Chr6:4280139 8.53E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g108 . . Bda06g00139 Bda08g00482 . Bpe07g00078 . . . Cmo16g00608 . . . . . Cpe14g00472 . . . . . . . . Cla07g01412 Cam07g1514 Cec07g1610 Cco07g1570 Clacu07g1502 Cmu07g1472 Cre07g1849 . . Cone6ag0838 . . . . Cme07g01580 . . . . . . Bma05g00855 Bma12g00049 . . . . Cma16g00559 . . . . . . . . . . . . . . . . . . . Csa04g00641 Chy07g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001955 2 3 1 4 1 2 2 2 2 2 1 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 5 3 1 66