Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0839 ATGGATTGGGGTAATAGTATCTCAGTATGGAACAACTTCATCTTTTTGGACGAGGCTGCTAGTCCAACCTTCTTCATTATGCTTAGGAAAATTTCTAAGACCGACCAATTACTGTTTGACCTCAGAGCGGGTCTACGGGTCGACCGGAAAACTAGAAGATCGCCGTGGAGACGGCGATTATTAATCGTTAATCTGGCCGAGGAGGTGAAACGCTCGACTGAAGGAGTTAAGGCTCCCAGTAATGCCTTCCTCAGCATCTGCAAATCTCTCTGCGCCGGAGGAATCGCCGGCGGAGTGTCACGTACTGCAGTTGCGCCATTGGAAAGACTGAAGATTTTGCTTCAGGTTCAAAATCATCATAGTATAAAGTATAAGGGAACCATCCAGGGCTTGAAATACATCTCGAGAACTGAGGGATTCAGAGGATTGTTCAAAGGCAATGGAACTAATTGCGTGCGCATCGTCCCAAACTCGGCAGTCAAGTTCTTTAGTTATGAGGAAGCATCTAGGGGCATCCTTTGGCTGTATCGACAGCAAACTGGAAATGAAGATGCTCAACTTACTCCAGTCCTACGTCTTGGAGCAGGTGCTTGTGCAGGTATTATTGCAATGTCAGCAACTTACCCAATGGACCTGGTACGAGGTCGGCTCACTGTTCAGACAGAAAAGTCCCCTTACCAGTATAGAGGAATTTTTCATGCTCTTTCAACAGTCCTCCGGGAAGAAGGTCCTCGTGCTTTATACAAAGGCTGGCTGCCATCTGTCATAGGAGTTATACCATATGTGGGCCTCAACTTTGCTGTATATGAATCTTTAAAGGACTGGTTGATAAAAAGCAAGGCTTTCGGGCTAGTCCAGGACTCTGAGTTGAGTGTGACAACTAGGCTTGCATGCGGTGCTGTTGCTGGAACTGTGGGCCAGACAGTTGCTTACCCGCTTGACGTTGTTCGTCGAAGGATGCAAATGGTGGGGTGGAAAGATGCTGCCTCAGTTGTTACTGGTGGTGGGGTGAGTAAAACATTCCTTGAATACAACGGCATGATTGATACGTTCAGGAAAACCGTTCAACATGAGGGATATGGTGCATTATATAAGGGTTTGATCCCCAATTCAGTAAAGGTGGTGCCATCTATAGCAATTGCATTTGTGACTTACGAAGTAGTGAAGGATATTCTTGGAGTTGAGATGAGGATCTCCGACTGA 1203 46.47 MDWGNSISVWNNFIFLDEAASPTFFIMLRKISKTDQLLFDLRAGLRVDRKTRRSPWRRRLLIVNLAEEVKRSTEGVKAPSNAFLSICKSLCAGGIAGGVSRTAVAPLERLKILLQVQNHHSIKYKGTIQGLKYISRTEGFRGLFKGNGTNCVRIVPNSAVKFFSYEEASRGILWLYRQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDLVRGRLTVQTEKSPYQYRGIFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKAFGLVQDSELSVTTRLACGAVAGTVGQTVAYPLDVVRRRMQMVGWKDAASVVTGGGVSKTFLEYNGMIDTFRKTVQHEGYGALYKGLIPNSVKVVPSIAIAFVTYEVVKDILGVEMRISD 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4286484 4290474 - Conep06aG0086500.1 Cone6ag0839 439723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0839 400 ProSiteProfiles Solute carrier (Solcar) repeat profile. 84 171 IPR018108 -
Cone6ag0839 400 FunFam Mitochondrial substrate carrier 82 394 - -
Cone6ag0839 400 PANTHER SOLUTE CARRIER FAMILY 25 74 392 - -
Cone6ag0839 400 Gene3D Mitochondrial carrier domain 81 394 IPR023395 -
Cone6ag0839 400 ProSiteProfiles Solute carrier (Solcar) repeat profile. 290 391 IPR018108 -
Cone6ag0839 400 ProSiteProfiles Solute carrier (Solcar) repeat profile. 187 275 IPR018108 -
Cone6ag0839 400 Pfam Mitochondrial carrier protein 289 392 IPR018108 -
Cone6ag0839 400 Pfam Mitochondrial carrier protein 187 279 IPR018108 -
Cone6ag0839 400 Pfam Mitochondrial carrier protein 85 170 IPR018108 -
Cone6ag0839 400 SUPERFAMILY Mitochondrial carrier 83 387 IPR023395 -
Cone6ag0839 400 PRINTS Mitochondrial carrier protein signature 146 166 IPR002067 GO:0055085(InterPro)
Cone6ag0839 400 PRINTS Mitochondrial carrier protein signature 89 102 IPR002067 GO:0055085(InterPro)
Cone6ag0839 400 PRINTS Mitochondrial carrier protein signature 202 220 IPR002067 GO:0055085(InterPro)
Cone6ag0839 400 PRINTS Mitochondrial carrier protein signature 102 116 IPR002067 GO:0055085(InterPro)
Cone6ag0839 400 PRINTS Mitochondrial carrier protein signature 248 266 IPR002067 GO:0055085(InterPro)
Cone6ag0839 400 PRINTS Mitochondrial carrier protein signature 299 321 IPR002067 GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0839 K14684 - - rcu:8268649 598.201
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1356 Cone-Chr19:9005778 Cone6ag0839 Cone-Chr6:4286484 4.95E-56 dispersed
Cone4ag1670 Cone-Chr4:12514076 Cone6ag0839 Cone-Chr6:4286484 1.63E-60 dispersed
Cone4ag1798 Cone-Chr4:13060775 Cone6ag0839 Cone-Chr6:4286484 2.76E-51 dispersed
Cone6ag0839 Cone-Chr6:4286484 Cone7ag0731 Cone-Chr7:4427943 1.49E-53 dispersed
Cone11ag0478 Cone-Chr11:2416386 Cone6ag0839 Cone-Chr6:4286484 2.04E-207 wgd
Cone18ag1031 Cone-Chr18:7616034 Cone6ag0839 Cone-Chr6:4286484 7.97E-207 wgd
Cone6ag0839 Cone-Chr6:4286484 Cone9ag0836 Cone-Chr9:4096979 1.94E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0839 Cone9ag0836 . . . . . . . . . . . . . . . Cma06g01029 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003572 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 2 1 2 2 4 2 47