Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0841 ATGGCCGATTCTGCAACTTCTCAAGCCGCCATCATTGGCCAACCATTAGTGCCCAAGAAATCTAGGAACAGCCGGAAAGCACTGAAAGACAAAAACCAACCATCGCCGCCACAGGCCAACTTATCGGTCGGAAAATCTCCGGCACCGGAGGTGACCATGCCGGAATCGGAAAACCTAGAAAAGGAGAACGATGGGAGTCTCTCTCAGACTCTATCTTCGCCCAAGAAAGGTAAATCTAAAGCGGTGGCTTCAAAGAAGCAAAAGCCTAAGGTGGCATCATCCATGGATAAAGACATGCAAGATCTGCAAGATATGCTTCAGCAATTGAAGATCGAGAAGGAGAAAACAGAGGAGATTTTGAAGGCTAAGGATGAGATCTTGAAGCAGAAGGAGGAGGAGCTAGAAACTCGAGGCCGAGAGCAGGAGAAGCTTCAAATGGAGCTGAAGAAGTTGCAGAAAGCGAAAGAGTTTAAACCCATTATGGACCTGAACTTCCCTATAGTTCAAGAAAAGCAAGAGAATAAGAAGGGGTGCCCTGAAAAGAAAAGGCCATCTCCACCGTACATTTTGTGGTCCAAAGATCAATGGATTGAAATCAAGAAGGATAAGCCAGACGCAGATTTCAAGGAAATTTCAAACATTTTGGGGGCAAAATGGAAGAATGTCACTGCAGACGAGAAGAAGCCCTATGAGGAGAGATATCAAGCAGAAAAGGAAGCCTATTTGCAGGTAATGGCTAAAGAGAAAAGAGAGAGTGAAGCCATGAAGCTTCTAGAGGAAGAGCAGAAGCAGAGGATGGCTAAGGAGCTCCTTGATCAGTACCTTCAATTCAAGCAAGAAGCAGAACATGATAACAAGAAAACCAAGAAAGAAAAAGACCCATTGAAACCTAAGCAGCCTATGTCAGCTTTTTTCATCTTCTCAAATGAAAGGCGCCCAGCTCTGCTTGCAGCCAACAATAATATATTAGAGGTAGCAAAAATTCTGGGTGAAGAGTGGAAGAGCATGACAGAAAAGCAGAGGAAGCCTTATGAAGAGATTGCAACAAAGAACAAGGAAAAGTATGTGATGGAAATGGAAGCTTACAAACAGAGGAAGGAGGAGGAAGCTGCAAGTCACAAAAAGGAAGAGGAAGAGCACATGAAACTTCAGAAACAAGAAGCTTTGCAGCTGCTCAGGAAGAAAGAGAAAACAGACAACATAATCAAGAAAACTAAGGAGGATCGTCAGAAGAAGAAGAAAGAGAGGGAAGAGAAAAAGGCTGTTGACCCTAACAAGCCAAAGAAGCCTGCCTCCTCTTTCTTTCTATTCAGTAGAGAAAAAAGGAAGAATTTAACAGAGGAGATACCTGGCATTAACAACTCCACTCTTACTGCAATGATTTCAGTGAAATGGAAGGAATTGAAGGAGGAAGAGAAGAAAGTTTGGAACGATAGAGCTGCAGAGACTATGGAGGCTTACAAGAAGGAACTGGAAGAGTACAACAAGTCTGTTGTTGCATTGAAGAAGGATGGTGACAATGAAATATGA 1530 43.27 MADSATSQAAIIGQPLVPKKSRNSRKALKDKNQPSPPQANLSVGKSPAPEVTMPESENLEKENDGSLSQTLSSPKKGKSKAVASKKQKPKVASSMDKDMQDLQDMLQQLKIEKEKTEEILKAKDEILKQKEEELETRGREQEKLQMELKKLQKAKEFKPIMDLNFPIVQEKQENKKGCPEKKRPSPPYILWSKDQWIEIKKDKPDADFKEISNILGAKWKNVTADEKKPYEERYQAEKEAYLQVMAKEKRESEAMKLLEEEQKQRMAKELLDQYLQFKQEAEHDNKKTKKEKDPLKPKQPMSAFFIFSNERRPALLAANNNILEVAKILGEEWKSMTEKQRKPYEEIATKNKEKYVMEMEAYKQRKEEEAASHKKEEEEHMKLQKQEALQLLRKKEKTDNIIKKTKEDRQKKKKEREEKKAVDPNKPKKPASSFFLFSREKRKNLTEEIPGINNSTLTAMISVKWKELKEEEKKVWNDRAAETMEAYKKELEEYNKSVVALKKDGDNEI 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4298018 4299963 - Conep06aG0086700.1 Cone6ag0841 439725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0841 509 Coils Coil 271 291 - -
Cone6ag0841 509 Coils Coil 231 251 - -
Cone6ag0841 509 Gene3D High mobility group box domain 406 504 IPR036910 -
Cone6ag0841 509 Gene3D High mobility group box domain 280 379 IPR036910 -
Cone6ag0841 509 SMART hmgende2 180 250 IPR009071 -
Cone6ag0841 509 SMART hmgende2 296 364 IPR009071 -
Cone6ag0841 509 SMART hmgende2 426 496 IPR009071 -
Cone6ag0841 509 CDD HMG-box_AtHMGB6-like_rpt1 182 249 - -
Cone6ag0841 509 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 297 363 IPR009071 -
Cone6ag0841 509 Pfam HMG (high mobility group) box 427 495 IPR009071 -
Cone6ag0841 509 Pfam HMG (high mobility group) box 182 246 IPR009071 -
Cone6ag0841 509 Pfam HMG (high mobility group) box 297 363 IPR009071 -
Cone6ag0841 509 MobiDBLite consensus disorder prediction 277 299 - -
Cone6ag0841 509 MobiDBLite consensus disorder prediction 63 77 - -
Cone6ag0841 509 MobiDBLite consensus disorder prediction 1 98 - -
Cone6ag0841 509 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 427 495 IPR009071 -
Cone6ag0841 509 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 181 249 IPR009071 -
Cone6ag0841 509 MobiDBLite consensus disorder prediction 362 426 - -
Cone6ag0841 509 Gene3D High mobility group box domain 179 257 IPR036910 -
Cone6ag0841 509 SUPERFAMILY HMG-box 422 498 IPR036910 -
Cone6ag0841 509 SUPERFAMILY HMG-box 173 246 IPR036910 -
Cone6ag0841 509 Coils Coil 356 422 - -
Cone6ag0841 509 Coils Coil 92 154 - -
Cone6ag0841 509 MobiDBLite consensus disorder prediction 362 437 - -
Cone6ag0841 509 SUPERFAMILY HMG-box 284 370 IPR036910 -
Cone6ag0841 509 Coils Coil 477 504 - -
Cone6ag0841 509 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 502 IPR044601 GO:0003677(InterPro)
Cone6ag0841 509 MobiDBLite consensus disorder prediction 277 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0841 K09273 - - csv:101204736 555.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0841 Cone-Chr6:4298018 Cone8ag0896 Cone-Chr8:8722294 6.24E-09 dispersed
Cone6ag0841 Cone-Chr6:4298018 Cone9ag0838 Cone-Chr9:4108447 2.90E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g113 . . . Bda08g00480 . . . . . . . . . . . Cpe14g00470 . . . . . . . . . . . . . . . . . Cone6ag0841 Cone9ag0838 . . . Cme07g01578 . . . . . . Bma05g00859 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00644 Chy07g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013737 1 1 1 1 1 0 2 0 0 1 0 0 0 1 1 0 0 2 2 0 1 1 1 1 1 1 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46337 PF14432 DYW_deaminase 2.80E-43 CL0109 Cone TR