Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0848 ATGGCCAGAGAAGAGGTTGAGAATGGCAGAGAGGATATGGTGATAGATGGACCTGAGCAGAGGCAGGGTGATGTATTTGATGCTAATTATCTCAAACTTTATTACGGGAAGTTCTTTCCGCATGCTGATGTATATAAATGGATGTCTTATGGAAATGATGGGAAGCATCCAGCCTGTGACCAGACCTACTTTGGCCGAAGAGAATTTTCTTTCACACTGGATAATGATATTTATCTGAGGTTTCAGTCTTTCAATAGTTTGTCTGAGATGGAAAGTTCAATCAGAGACAAATGTCCTGTTAAAATTGATATTGGGCCTGTATACACTGTAGACCCTTCAAAGAGGCACGCCTATGCCCAAAGTGGTGATAATGTTTTCAGCCCAGTGGAGAGAGAGCTAGTTTTTGATATAGATATGACTGATTATGATGATGTTAGATACTGCTGTTCCGGAGCTGATGTATGCTTGGACTGCTGGCCACTAATGACTGCTGCAATCAAAGTGATTGATACTGCCCTCAGAGATGACTTTGGATTCCATCACTTACTATGGGTATTTAGTGGTAGACGTGGTGTTCATTGTTGGGTTTGTGATGGGAGAGCAAGAAGGTTGACTAATGAACAGAGGGCTGCCATTGCTGATTATTTCCGCTTATATCAGGGAAACGAAAACAGTCAGAAGAAGATTTCTCTATCTGGTTCTGTTCTTCACCCATTCCTTTCGCGATCATATACTGAAGTCCTAAAGGAATATTTCGAGACGAAATTGCTTTCAAGTCAAAAGATATTTTCAACCGAGGAGAGATATGAGAAGATTTTAGATATGATTCCTGATGAGTCCATTACATCTGAGCTACGAGGAAGGTGGCAGGACAATCGGGGATCCTCTATTTCAAAAGAAGCTATAAATTCTGTACGATGGGAGCAGCTAAAACGTATTCTACAATCCGCTAAACATAAGGTACAAAATACTCTTGTTTTACCAGTGTTTCTTTCAAAGGATGGAAAAGAGGGGATGCAAGTATAG 1026 40.74 MAREEVENGREDMVIDGPEQRQGDVFDANYLKLYYGKFFPHADVYKWMSYGNDGKHPACDQTYFGRREFSFTLDNDIYLRFQSFNSLSEMESSIRDKCPVKIDIGPVYTVDPSKRHAYAQSGDNVFSPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTALRDDFGFHHLLWVFSGRRGVHCWVCDGRARRLTNEQRAAIADYFRLYQGNENSQKKISLSGSVLHPFLSRSYTEVLKEYFETKLLSSQKIFSTEERYEKILDMIPDESITSELRGRWQDNRGSSISKEAINSVRWEQLKRILQSAKHKVQNTLVLPVFLSKDGKEGMQV 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4327329 4329547 + Conep06aG0087400.1 Cone6ag0848 439732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0848 341 Gene3D DNA primase, PRIM domain 19 334 - -
Cone6ag0848 341 Pfam DNA primase small subunit 135 294 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
Cone6ag0848 341 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 32 323 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Cone6ag0848 341 CDD AE_Prim_S 40 244 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Cone6ag0848 341 SUPERFAMILY Prim-pol domain 27 308 - -
Cone6ag0848 341 PANTHER DNA PRIMASE SMALL SUBUNIT 29 324 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0848 Cone-Chr6:4327329 Cone9ag0846 Cone-Chr9:4135582 4.12E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0848 K02684 - vvi:100260326 549.666