Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0862 ATGGAGATTGCCTCTGCTCTCACCATTTTCTTCTCATCCCGGACCTTTTCGGTAGCCGAAATCGTCACCCTGTTCTGTTTCCTTATCGCTATCTTCACATTCCGATCATTCTTGATTCCATTCATCAATAAAACAAAATCGGCTAATAAATCAAGGGGCAGTGGTTCCGACGCGTTAGTGAGGAAAATAGTCTGCGGTTGTGCCTGTTCTTGTGACAGTAGCGTAGTTGCCAGTGGTTCAGACTCTATGGCGTTGGAATCATCAACGGCTGTAAATGCTCCGTTAATGAACGGTGGAGCGGCCAATATGTTGGAGAGGACGCCTGTGATGGTAACAGAACGGCAGATTGGCGCATCGATGATGGAGCAGTTGGTGCCAGAGATTACGACGCATGCACTCAGTTACTTGGATTATCCTAGTCTATGCCGGCTTTCCATGACTAATTCGTCCATGCGTAAGGCTGCGAACGATGATAATGCGTGGAAGGCACTTTATCACAAGGACTTCACATTCGAACAGGATACTGTGACACCGATAAATGGGTGGAAGGCTTACTATGCTGCTACAAGAGCAATTGTAAATATCAATGCGGAATTCTTTAGGATAATCAGAGAACGATCTATTCAAGACATGAGTCATTTTTGGCTAAATGCAGATTACGTGAAGTGTATTCATGCTTCGGGAGAATTTTTTTCAGGGTATAATGCCGTAATACAGAGTTGGCAGCTTGCATTTAACTGGGAGCAAGGAGTTAACTTTCAGGTGAGAGATGTGCGGGCCCGAGTGCTTTCCGACGTGGCTTGGATCAGCTTGAAAACCTATGTTGACATGGACACCGGGCCATTCAATGTGACTAATATCTACGAGTTTCATAATGGTCGATGGTACATGGTTCATCATCACAGCTCTGTGATGGAGATGGAACAACAGATTATGCATGGGTAA 945 45.19 MEIASALTIFFSSRTFSVAEIVTLFCFLIAIFTFRSFLIPFINKTKSANKSRGSGSDALVRKIVCGCACSCDSSVVASGSDSMALESSTAVNAPLMNGGAANMLERTPVMVTERQIGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSSMRKAANDDNAWKALYHKDFTFEQDTVTPINGWKAYYAATRAIVNINAEFFRIIRERSIQDMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQLAFNWEQGVNFQVRDVRARVLSDVAWISLKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVMEMEQQIMHG 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4395691 4402125 + Conep06aG0088900.1 Cone6ag0862 439746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0862 314 Gene3D - 109 162 - -
Cone6ag0862 314 SUPERFAMILY NTF2-like 187 305 IPR032710 -
Cone6ag0862 314 SUPERFAMILY F-box domain 116 191 IPR036047 GO:0005515(InterPro)
Cone6ag0862 314 CDD F-box_FBXL4 122 167 - -
Cone6ag0862 314 Gene3D - 184 311 - -
Cone6ag0862 314 PANTHER F-BOX PROTEIN SKIP8 11 313 IPR044260 -
Cone6ag0862 314 Pfam SnoaL-like domain 192 305 IPR037401 -
Cone6ag0862 314 Pfam F-box-like 126 166 IPR001810 GO:0005515(InterPro)
Cone6ag0862 314 ProSiteProfiles F-box domain profile. 118 164 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0862 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0862 Cone-Chr6:4395691 Cone9ag0864 Cone-Chr9:4212352 1.58E-207 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g156 . Blo03g00257 Bda06g00156 . . Bpe07g00062 . . . Cmo16g00590 . . . . . Cpe14g00453 . . . . . . . . Cla07g01091 Cam07g1407 Cec07g1254 Cco07g1231 Clacu07g1156 Cmu07g1135 Cre07g1515 . . Cone6ag0862 Cone9ag0864 Lsi07g01122 . . Cme07g01541 . . . . . . . Bma12g00615 . . . . Cma16g00538 . . . . . . . . . . . . . . . . . . . Csa04g00672 Chy07g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007131 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 2 1 36