Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0864 ATGTTAGAGGCATCAACAAATCAGGTGCTGAATCAGAAACTTCCTGATTTTAAGCTTCCTTCCAAGATTTCATGTCGAGTAGTAAACGCTCGGCTGATGGCAGAGCAGGAAACAGATGAAGTTTATGCACAGATAACTTTATTGCCGGAGCCAGCTAAACCTGAGCCTACAAATCATGATTCATGTGTTTCTGAACCTCCAAGGCCAAAAATTCACTCATTTTGTAAGGTCTTAACTGCTTCTGATACTAGTACCCATGGTGGGTTTTCTGTACTCCGCAAGCATGCCACTGAATGCCTTCCTCCCCTGGACATGACCCAGCCAACTCCAATACAAGAACTGGTAGCCAAGGATCTTCATGGTTATGAGTGGCGATTCAAACATATTTTTAGAGGTCAACCACGGAGGCACTTGCTAACAACTGGATGGAGCACATTTGTTACTTCTAAGAGATTAGTTGCAGGGGATTCTTTTGTATTCCTGAGGGGAGAAAATGGGGATTTACGTGTTGGAGTGAGACGTCAAGCTTGTCAAAAGAGCAGTATGCCTTCATCTGTAATTTCAAGTCAAAGCATGCACGTAGGAGTGCTCGCTACTGCATCGCATGCTGTTTCGTCCCAAACAATGTTTGTAGTTTATTATAAGCCAAGGACAAGCCAATTTATCATAAGCTTGAAGAAATACTCCGAAGCTGTCAACAATAAGTTTTCTGTCGGTTCAAAATTCAAGATGAGGTTTGAAGGGGAGGATTCTCCAGAAAGAAGGTTTTCAGGCACTATAGTTGGGGTTGAAGACATGTCTTCCAACTGGGCTGATTCGAAATGGAGATCTTTGAAAGTTCAATGGGATGAACCAGCCTCTATTTCAAGACCTGATAGGGTTTCACCTTGGGAGATAGAACCCTTTGTGGCTGCTTCTGCTCCTAACTTAGCTCAACCAGTTTTGGTAAAGAGCAAAAGGCCTCGGCAACCCTTTGAAAATCCTGCCCTTGATTCTAGTAATTCAACTCCATCACCTCTTTGGAACTCTGTATTGACTCAACCTCATGATAGACCACAACTGAGCAATGTTACAGCTGAAAGCAAAAGAAATGGAAATCATAGCCTGTGGCATCATATGCAGACAGATAACTCCATGAACAGCAACTCTTTTTCAAGGAATCAAAATGATGGGTCCTGGTTATCATCACCACCCCCCCATGCAAATGGTTCTCAACATCTTTTTCTTGATATGACTGAAGATAATAAAAGTGTTCCTGCATGGTCTGTGTCTGCTTTTTCAGCATATTCTACCACCCAATCATCAAAACCGAACAATGACCCCATCATGATTCCTGACCCTGTGGAAAAAGGGAAGAAAACTGAGATGCCTACTAGTTGTAGATTGTTTGGTATTGAGCTGATTAATAATCCTACACGTACTCCCCCTACTTCTGAAAAAGCCTGTGCTCATCCAATACTTATGTCTAGTGACAGCAGTGAAGGGAATGCCAGTAACCTGTCAATTGCTGATTCTGATAAAAAGTCGGACTTTTTAAAGGGTTCTAAAGAGAGAAATACAAGTGTATTACAGGTATCTCCAAAAGATATCCAAAGCAACCAAAATTGCTCTAGCAATGCCAGAAGCCGCACCAAGGTACAAATGCAAGGGATGGCTGTGGGTCGAGCTGTGGACCTAACAATGTTGGAAGGGTATGATCAACTTGTTGATGAACTGGAGAAGTTGTTTGATATCAAGGGACAGCTTCGGCCACGTGACAAGTGGGACATTGTATTTACTGATGATGAAGGGGACACAACGCTCATGGGAGATTATCCTTGGCATGAATTCTGTGATATGGTTAGAAGAATATTTATACGTTCGAGCCATGATATGAAGAAGATGAGTTCGGTGCCCATGTCGTCTATAGAAGGTGAATTCACTGTAAAAAGCGCAGAGCTTGCTGAAATTTGA 1953 42.45 MLEASTNQVLNQKLPDFKLPSKISCRVVNARLMAEQETDEVYAQITLLPEPAKPEPTNHDSCVSEPPRPKIHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQPTPIQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGDLRVGVRRQACQKSSMPSSVISSQSMHVGVLATASHAVSSQTMFVVYYKPRTSQFIISLKKYSEAVNNKFSVGSKFKMRFEGEDSPERRFSGTIVGVEDMSSNWADSKWRSLKVQWDEPASISRPDRVSPWEIEPFVAASAPNLAQPVLVKSKRPRQPFENPALDSSNSTPSPLWNSVLTQPHDRPQLSNVTAESKRNGNHSLWHHMQTDNSMNSNSFSRNQNDGSWLSSPPPHANGSQHLFLDMTEDNKSVPAWSVSAFSAYSTTQSSKPNNDPIMIPDPVEKGKKTEMPTSCRLFGIELINNPTRTPPTSEKACAHPILMSSDSSEGNASNLSIADSDKKSDFLKGSKERNTSVLQVSPKDIQSNQNCSSNARSRTKVQMQGMAVGRAVDLTMLEGYDQLVDELEKLFDIKGQLRPRDKWDIVFTDDEGDTTLMGDYPWHEFCDMVRRIFIRSSHDMKKMSSVPMSSIEGEFTVKSAELAEI 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4412479 4416978 + Conep06aG0089100.1 Cone6ag0864 439748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0864 650 Pfam AUX/IAA family 531 577 IPR033389 -
Cone6ag0864 650 ProSiteProfiles B3 DNA-binding domain profile. 74 176 IPR003340 GO:0003677(InterPro)
Cone6ag0864 650 Gene3D - 235 307 - -
Cone6ag0864 650 SMART B3_2 74 176 IPR003340 GO:0003677(InterPro)
Cone6ag0864 650 SUPERFAMILY DNA-binding pseudobarrel domain 60 203 IPR015300 -
Cone6ag0864 650 MobiDBLite consensus disorder prediction 327 402 - -
Cone6ag0864 650 MobiDBLite consensus disorder prediction 319 406 - -
Cone6ag0864 650 SUPERFAMILY CAD & PB1 domains 536 617 - -
Cone6ag0864 650 MobiDBLite consensus disorder prediction 518 543 - -
Cone6ag0864 650 CDD B3_DNA 72 174 IPR003340 GO:0003677(InterPro)
Cone6ag0864 650 FunFam Auxin response factor 235 306 - -
Cone6ag0864 650 Gene3D - 536 629 - -
Cone6ag0864 650 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 630 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone6ag0864 650 Gene3D - 71 176 IPR015300 -
Cone6ag0864 650 MobiDBLite consensus disorder prediction 430 456 - -
Cone6ag0864 650 FunFam Auxin response factor 72 176 - -
Cone6ag0864 650 Pfam B3 DNA binding domain 74 175 IPR003340 GO:0003677(InterPro)
Cone6ag0864 650 ProSiteProfiles PB1 domain profile. 541 622 IPR053793 -
Cone6ag0864 650 Pfam Auxin response factor 200 279 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0864 Cone-Chr6:4412479 Cone9ag0298 Cone-Chr9:1285154 2.64E-90 dispersed
Cone14ag0428 Cone-Chr14:2007796 Cone6ag0864 Cone-Chr6:4412479 6.31E-206 wgd
Cone15ag0465 Cone-Chr15:2208844 Cone6ag0864 Cone-Chr6:4412479 2.72E-196 wgd
Cone5ag1564 Cone-Chr5:10893332 Cone6ag0864 Cone-Chr6:4412479 5.56E-89 wgd
Cone6ag0864 Cone-Chr6:4412479 Cone9ag0869 Cone-Chr9:4229505 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46340 PF05641 Agenet 9.60E-09 CL0049 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0864 K14486 - rcu:8286247 878.626