Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0873 ATGCCTCAAGAGCTAGGGGGCTCAGTTCGACGAAGCCTTTCGAGGAGGCGTTCGTTCCAACATGAGGTCGTTGACAGGGATGATAGAGGATGGACTCTTCTTCACATTGGTGCTCGAAAGGGTAACCTCAAGGAGGTTAAGCGGCTTCTGGATGAAGGAATAGATGTGAATGTAGAAGCTTGTGGCCCCAAGTCGAAAGGGGTGACCCCTCTCCACCTTGCTGCTGAGGGGGGCCACCTTCGAGTTATGGATGAATTGCTTGAACGTGGTGCCAACATTGATGCTAGAACTAAAGGTGCTTGTGGCTGGACACCGCTTCACAATGCAGCTAAAGAAAGGAGAAGGGCGGCAGTGAAATTCCTTGTGGAAAATGGAGCTTTCTTGCCTGATGAAATCTCCGATTGTAGGTTCAATCCACCACTTCATTACTGTCCTGGTCTTGAGTGGGCTTATGAAGAGTTGAAGCGTCTTCAACAAGAAGACTCATCTGCTGGTGAAACATCTTACAGTTCTGAAAGCTGA 522 49.04 MPQELGGSVRRSLSRRRSFQHEVVDRDDRGWTLLHIGARKGNLKEVKRLLDEGIDVNVEACGPKSKGVTPLHLAAEGGHLRVMDELLERGANIDARTKGACGWTPLHNAAKERRRAAVKFLVENGAFLPDEISDCRFNPPLHYCPGLEWAYEELKRLQQEDSSAGETSYSSES 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4462870 4465275 - Conep06aG0090000.1 Cone6ag0873 439757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0873 173 Pfam Ankyrin repeats (3 copies) 26 96 IPR002110 GO:0005515(InterPro)
Cone6ag0873 173 SUPERFAMILY Ankyrin repeat 26 144 IPR036770 -
Cone6ag0873 173 ProSiteProfiles Ankyrin repeat profile. 29 61 IPR002110 GO:0005515(InterPro)
Cone6ag0873 173 ProSiteProfiles Ankyrin repeat profile. 66 98 IPR002110 GO:0005515(InterPro)
Cone6ag0873 173 Gene3D - 8 169 IPR036770 -
Cone6ag0873 173 ProSiteProfiles Ankyrin repeat region circular profile. 29 58 - -
Cone6ag0873 173 ProSiteProfiles Ankyrin repeat region circular profile. 101 126 - -
Cone6ag0873 173 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED 15 163 - -
Cone6ag0873 173 PRINTS Ankyrin repeat signature 117 131 IPR002110 GO:0005515(InterPro)
Cone6ag0873 173 PRINTS Ankyrin repeat signature 67 82 IPR002110 GO:0005515(InterPro)
Cone6ag0873 173 ProSiteProfiles Ankyrin repeat profile. 101 126 IPR002110 GO:0005515(InterPro)
Cone6ag0873 173 ProSiteProfiles Ankyrin repeat region circular profile. 66 98 - -
Cone6ag0873 173 Pfam Ankyrin repeat 101 126 IPR002110 GO:0005515(InterPro)
Cone6ag0873 173 SMART ANK_2a 66 95 IPR002110 GO:0005515(InterPro)
Cone6ag0873 173 SMART ANK_2a 29 58 IPR002110 GO:0005515(InterPro)
Cone6ag0873 173 SMART ANK_2a 101 131 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0873 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0873 Cone-Chr6:4462870 Cone9ag0879 Cone-Chr9:4288560 2.34E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g916 Blo02g01165 . . Bda08g00449 Bpe05g00711 Bpe07g00055 . . . Cmo16g00572 . . . . . Cpe14g00444 . . . . . . . . . . . . . . . . . Cone6ag0873 Cone9ag0879 . . . . . . . . . . Bma05g00893 . . . . . Cma16g00523 . . Cpe01g00525 . . . . . . . . . . . . . . . . Csa04g00688 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005963 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39