Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0874 ATGATTTGCAGTAGGTGTATTATCCTAGGGAAGTTCCACCATGGTCATCTGTCTGGTGAATGGCGAGGGCTGTGGCTACTACATTATATTTTACTGCTTTGTACAATAAACAAAGGCAGTAGTCTTAACTCTGATGGTGAGGCACTTCTAAGCTTTAGAACAGCAGTTATTAGTTCTGATGGTGTCCTCCCGAAGTGGAGACCAGAAGATCCAGATCCATGTGGTTGGAAAGGAGTGACATGTGATCCAAAGACCAAGAGAGTAATATATTTGAGTCTTCCACATCATAAACTGAGTGGATCGCTATCACCTGATCTGGGGAAGCTAGAGCAATTGAGGATTTTAGCTCTTCATAATAACAATTTCTATGGAACAATCCCATCAGAGTTGGGAAATTGCTCGCAGTTGCAAGGAGTATTCTTTCAGGGTAATTACTTAAGTGGGTCAATACCTGATGAATTGGGAAATCTTTCACAGCTGGAAAATTTAGATATCTCAAGCAATTCTCTTGGTGGAAATATCCCCGTATCCCTGGGAAAGTTGAAAAAGCTCGTTACTCTCAATGTGTCAAACAATTTTCTGGTTGGACCACTACCTTTGGATGGTTTGCTTATCAACTTTTCAGAAAACTCATTTGTTGGGAACCGTGGGTTGTGCGGGAAACAGATCAATGTGGCATGCAAAACTGATGGTGGAGGCACTGGAACAAACTCACAACATACAATCTCAGGTGAATTCCCAGGTGGAAGGAAGAAGTACTCTGGCCGCCTTCTTATTAGTGCGTCAGCAACTGTTGGTGCGCTCCTTCTGGTGGCACTTATGTGTTTTTGGGGCTGCTTTCTTTATAAGAAGTTTGGTAAAAATGACAGTAAAGGGCTTGCAATGGATGTTTGTGAAGGGGCATCAATTGTAATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATTATTAAGAAATTGGAAGCCTTGAATGAGGAGCATGTTATAGGTTGTGGGGGCTTTGGAACAGTTTACAAGCTCGAAATGGATGATGGCAATGTCTTTGCTTTAAAGAGGATCGTCAAGATGAATGAGAAATTTGATCGGTTTTTCGAGAGGGAACTGGAAATTCTTGGAAGCATAAAACATCGGCATTTAGTAAATTTGCGAGGATATTGCAATTCTCCTACATCAAAACTGTTAATTTATGATTTCTTACCTGGTGGTAGCCTTGACAATGTCCTTCATGAGAGATCCGAGCAAGTAGACTGGGATGCACGGTTGAACATTATCATGGGAGCAGCAAAAGGCTTGGCCTACTTACACCATGATTGCTCACCAAGGATCATACATAGAGACATAAAATCAAGCAACATTCTACTCAATGGAAATTTAGAGGCTCAAGTTTCTGACTTTGGGCTTGCCAAACTTTTGGAGGATGAAGAATCTCATATTACAACCATTGTTGCTGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCAACTGAAAAGACTGATGTGTACAGTTTCGGGGTTCTAGTGCTTGAAGTTTTAAATGGAAAGAGACCCACTGATGCATCATTCATTGAGAAGGGCCTTAACATTGTCGGCTGGTTAAATTTTCTTGTCACGGAGAATATACAAAGAGCAATTGTTGATCCACAGTGCGACGGGGTGCAACTAGAAAGTCTTGATGCCTTGCTCTTTGTTGCTACTAGATGCGTTTCTTCAAATCCAGAGGATCGGCCCACCATGCACAGGGTAGTCCAGATTCTTGAATCTGAGGTTATGACCCCTTGTCCAAGTGACTTCTATGATTCACACTCTGATTAA 1830 41.69 MICSRCIILGKFHHGHLSGEWRGLWLLHYILLLCTINKGSSLNSDGEALLSFRTAVISSDGVLPKWRPEDPDPCGWKGVTCDPKTKRVIYLSLPHHKLSGSLSPDLGKLEQLRILALHNNNFYGTIPSELGNCSQLQGVFFQGNYLSGSIPDELGNLSQLENLDISSNSLGGNIPVSLGKLKKLVTLNVSNNFLVGPLPLDGLLINFSENSFVGNRGLCGKQINVACKTDGGGTGTNSQHTISGEFPGGRKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLAMDVCEGASIVMFHGDLPYSSKDIIKKLEALNEEHVIGCGGFGTVYKLEMDDGNVFALKRIVKMNEKFDRFFERELEILGSIKHRHLVNLRGYCNSPTSKLLIYDFLPGGSLDNVLHERSEQVDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLNGNLEAQVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLNGKRPTDASFIEKGLNIVGWLNFLVTENIQRAIVDPQCDGVQLESLDALLFVATRCVSSNPEDRPTMHRVVQILESEVMTPCPSDFYDSHSD 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4465526 4470261 + Conep06aG0090100.1 Cone6ag0874 439758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0874 609 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 400 602 - -
Cone6ag0874 609 Pfam Protein kinase domain 326 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0874 609 SMART serkin_6 324 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0874 609 Gene3D Transferase(Phosphotransferase) domain 1 400 598 - -
Cone6ag0874 609 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 42 204 - -
Cone6ag0874 609 ProSiteProfiles Protein kinase domain profile. 324 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0874 609 SUPERFAMILY Protein kinase-like (PK-like) 310 591 IPR011009 -
Cone6ag0874 609 ProSitePatterns Protein kinases ATP-binding region signature. 330 356 IPR017441 GO:0005524(InterPro)
Cone6ag0874 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0874 609 Gene3D Ribonuclease Inhibitor 42 228 IPR032675 -
Cone6ag0874 609 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 35 153 IPR050647 -
Cone6ag0874 609 SUPERFAMILY L domain-like 42 210 - -
Cone6ag0874 609 Pfam Leucine rich repeat N-terminal domain 42 82 IPR013210 -
Cone6ag0874 609 Gene3D Phosphorylase Kinase; domain 1 297 399 - -
Cone6ag0874 609 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 298 399 - -
Cone6ag0874 609 Pfam Leucine Rich Repeat 111 133 IPR001611 GO:0005515(InterPro)
Cone6ag0874 609 Pfam Leucine Rich Repeat 159 181 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0292 Cone-Chr6:1342560 Cone6ag0874 Cone-Chr6:4465526 2.21E-279 dispersed
Cone6ag0874 Cone-Chr6:4465526 Cone9ag0327 Cone-Chr9:1427234 8.00E-285 dispersed
Cone6ag0874 Cone-Chr6:4465526 Cone9ag0880 Cone-Chr9:4293527 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82932 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0874 - - - 0.0