Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0875 ATGGAGGCCATTCGCAAGCAAGCTAGTAAGCTTAGGGAGCAAGTAGCTAAGCAACAGCAGGCAGTGCTTAAACAATTAGGGCACTTTGGTAATGATGGCCTTTTGATCGATGAAACCGAGCTTCAATGTTACCACCAACTTCAAAGTCTGTACAATTCAACCAGGACAGCTAAGCATTTCCAGAGGCATATTGTTCGTGGTGTCGAAGGTTTCATTTCATTAAGATCAAAGCAAATGGAGATTGTAAGAAGATTAGCAGATGATTGTTGCAAATATGGAGTTGACAATCAAACAACTGCCTCTCCTCTTTCAAAAGCTGCTCTTCACTTTGGAAACTCACATAACTCATTGGAAAAGGAAACGGAGACTCTGTTAGGGATCTTAGGTGACCAGGTTACTGAGCCACTAAGAGCACAAATAAATGGAGCACCTTTGGAGGATGCTCGGCATTTGACTCGACGTTATGACAAGCTCCGACAAGAGGTGGAATCACAGGCAGGTGAAGTGTTGAAACGCCAGTCTAAATCTAAGGAATCTGCTGCTATTTCTACTGAGAGTTCTATGAGGCTTCAAAGTGCTGAGGCGAGGTTGAGTGAACTTAAATCCACAATGGTGGCACTTGGGAAAGAAGCATCCGCTGCTATGCTTTCGGTTGAGGATCAGCAGCAACAGATGACTTTCCAGAAGCTTCTTGTCATGGTCAATGCTGAGAGATCGTACCATCAAAGTGTTCTTGGTATTTTGGACAAGCTGAATGATGAGATGGTTCTTGAAGAGCAGGCCAATGGTGCACGGTTGAACTCAATAAGTGGCCAGAGAGATACACATGCCGATACTCATCAAGAGGATTCCAAGCGAAGCAGATCTGATACCATTCTGCATTTGGATGAAAATATCACATTCTTCCTTGCAAAAGTCATTCACCCATTTGATGCTCAAGCAGATGGTGAGTTGAATCTTTCAGTCGATGATTATGTTGTGGTTCGTCAGGTGGGTTCGAATGGATGGTCAGAAGGAGAATGCAAGGGAAAAGCGGGATGGTTTCCCTCTGCCTATATTCAGAGGCAAGAGCAATCTCCTGCTAGCAAATCGGACATCATTTCCCTCCAGTCCTGA 1116 44.35 MEAIRKQASKLREQVAKQQQAVLKQLGHFGNDGLLIDETELQCYHQLQSLYNSTRTAKHFQRHIVRGVEGFISLRSKQMEIVRRLADDCCKYGVDNQTTASPLSKAALHFGNSHNSLEKETETLLGILGDQVTEPLRAQINGAPLEDARHLTRRYDKLRQEVESQAGEVLKRQSKSKESAAISTESSMRLQSAEARLSELKSTMVALGKEASAAMLSVEDQQQQMTFQKLLVMVNAERSYHQSVLGILDKLNDEMVLEEQANGARLNSISGQRDTHADTHQEDSKRSRSDTILHLDENITFFLAKVIHPFDAQADGELNLSVDDYVVVRQVGSNGWSEGECKGKAGWFPSAYIQRQEQSPASKSDIISLQS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4471860 4474517 - Conep06aG0090200.1 Cone6ag0875 439759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0875 371 Pfam Variant SH3 domain 306 354 IPR001452 GO:0005515(InterPro)
Cone6ag0875 371 Gene3D SH3 Domains 283 367 - -
Cone6ag0875 371 PANTHER SH3 DOMAIN-CONTAINING 10 355 IPR050384 -
Cone6ag0875 371 Coils Coil 190 210 - -
Cone6ag0875 371 Gene3D Arfaptin homology (AH) domain/BAR domain 2 258 IPR027267 -
Cone6ag0875 371 SUPERFAMILY SH3-domain 302 360 IPR036028 GO:0005515(InterPro)
Cone6ag0875 371 SUPERFAMILY BAR/IMD domain-like 46 255 IPR027267 -
Cone6ag0875 371 MobiDBLite consensus disorder prediction 263 289 - -
Cone6ag0875 371 SMART SH3_2 302 357 IPR001452 GO:0005515(InterPro)
Cone6ag0875 371 ProSiteProfiles Src homology 3 (SH3) domain profile. 299 358 IPR001452 GO:0005515(InterPro)
Cone6ag0875 371 Coils Coil 1 21 - -
Cone6ag0875 371 MobiDBLite consensus disorder prediction 275 289 - -
Cone6ag0875 371 Coils Coil 148 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0875 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1616 Cone-Chr5:11343939 Cone6ag0875 Cone-Chr6:4471860 1.46E-93 dispersed
Cone6ag0875 Cone-Chr6:4471860 Cone9ag0881 Cone-Chr9:4301807 2.57E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g923 . . . . . . Bma07g01221 . . . . . . . . . Cpe02g00590 . . . . . . . . . . . . . . . . Cone6ag0875 Cone9ag0881 . . . . . . . Bda09g00465 Bpe08g01063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012200 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 0 1 1 1 27