Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0876 ATGGCTACCACAATAATCCCACCCCTCTCTGTTTTACTATCCCTCCTAATTATGCAAACAATAGCGATTAGCACCAAAATTAATCATGGATTTACAGTCGACTTAATCCACCGTGATTCTCCACTCTCCCCATTCCACAAACCGTCTCTGACCCATTACAGCCGCCTTAACAAAGCTCTTCTCCGGTCCATTTCGCGAGCAACCACCTTTTCCAAGAGGTTTTCAACCACATCCCCATTATTAGCTAGTGGCGGAGAGTACTACATCAACATATCGATTGGGACCCCTCCTGTCCAACTCGTCGCTTTAGTCGATACTGGTGGCGATCTCTCATGGATTCAATGCCAACCCTGCAACTGCTATAAACAGACCCCACCATTATTCGACCCCACGAAATCCTCCTCATTCACTAAAATAGCCTGCGATACTCCAGCCTGCTCGGCTCTTAAAGAAGCCACATGTAGTAGTGATAAAACTTCATGCAGTTACAACTACACTTACGCAGACGGTTCGTTTACCGTTGGGAATCTCGCTTTTGAATCCCTGACCGTTGGATCGGTCAAACTACCTAAGATCGAATTGGGTTGTGGACATAACCAGCGTGGTATATTCAACCCGGTAGGATCTGGAATTGTTGGATTTGGAGGTGGGTCGCTTTCTTTAGTGTCCCAACTTGACAACAGTCATATTCATAGACTGTTTTCTTATTTTCTAGCACCGAATAACGGTCCAAGTACAATTAGTTTCGGAAGTGATGCTGTCATTTCCGGGCCCGGTGTTGTCAAAACTCCGCTCGTTATGAAAAACCCTGTTACATACTACTACGTGACACTTAATTCCTTGTGTGTTAATGGAGGGAAGAAGCTGACATGGAACAATGACACGTCGGGAAATAGTTCGGGGAATATTATTATTGATTCCGGGACGACATATACTATGTTACCTCCCGTGATTTTCGATCAGTTAGTGCTGGCGGTGAAGGTTCTTATGAAGGGTAAGGATATTGTTCCGGATCCGCACGGTATTCTTCCACTCTGTTTTGAAGGAGTGAGTGATGCGGATTTGCTGACGATTACGGCTCATTTTGACGGCGCGGACGTAGTGTTACCACCTGTTAATATGTTTTCTAGAGTTGGTCCTAGTGTGGTGTATTTGGCTTGTATTTCTACAACTGATGTTGCTGTGTGGGGGAATATCGCTCAGGTCAACTTTACCGTTGGTTTTGATCTTGAGAGAAAAACTGTGTCGTTTAAGCCTGGTGGTTAA 1266 44.94 MATTIIPPLSVLLSLLIMQTIAISTKINHGFTVDLIHRDSPLSPFHKPSLTHYSRLNKALLRSISRATTFSKRFSTTSPLLASGGEYYINISIGTPPVQLVALVDTGGDLSWIQCQPCNCYKQTPPLFDPTKSSSFTKIACDTPACSALKEATCSSDKTSCSYNYTYADGSFTVGNLAFESLTVGSVKLPKIELGCGHNQRGIFNPVGSGIVGFGGGSLSLVSQLDNSHIHRLFSYFLAPNNGPSTISFGSDAVISGPGVVKTPLVMKNPVTYYYVTLNSLCVNGGKKLTWNNDTSGNSSGNIIIDSGTTYTMLPPVIFDQLVLAVKVLMKGKDIVPDPHGILPLCFEGVSDADLLTITAHFDGADVVLPPVNMFSRVGPSVVYLACISTTDVAVWGNIAQVNFTVGFDLERKTVSFKPGG 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4475114 4476379 - Conep06aG0090300.1 Cone6ag0876 439760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0876 421 FunFam Aspartyl protease AED1 67 250 - -
Cone6ag0876 421 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 303 314 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone6ag0876 421 SUPERFAMILY Acid proteases 81 419 IPR021109 -
Cone6ag0876 421 ProSiteProfiles Peptidase family A1 domain profile. 87 418 IPR033121 -
Cone6ag0876 421 CDD pepsin_A_like_plant 86 419 IPR034161 -
Cone6ag0876 421 Gene3D Acid Proteases 65 251 IPR021109 -
Cone6ag0876 421 PANTHER OS07G0603500 PROTEIN-RELATED 21 419 IPR051708 GO:0005576(PANTHER)
Cone6ag0876 421 Pfam Xylanase inhibitor C-terminal 274 418 IPR032799 -
Cone6ag0876 421 Pfam Xylanase inhibitor N-terminal 87 251 IPR032861 -
Cone6ag0876 421 Gene3D Acid Proteases 257 420 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0876 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0308 Cone-Chr15:1430065 Cone6ag0876 Cone-Chr6:4475114 3.88E-08 dispersed
Cone5ag0761 Cone-Chr5:3261257 Cone6ag0876 Cone-Chr6:4475114 5.72E-58 dispersed
Cone5ag0762 Cone-Chr5:3262889 Cone6ag0876 Cone-Chr6:4475114 1.16E-52 dispersed
Cone6ag0670 Cone-Chr6:3410814 Cone6ag0876 Cone-Chr6:4475114 9.03E-24 dispersed
Cone6ag0876 Cone-Chr6:4475114 Cone9ag0881 Cone-Chr9:4301807 5.59E-78 dispersed
Cone6ag0876 Cone-Chr6:4475114 Cone14ag0284 Cone-Chr14:1309905 9.87E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g925 Blo02g01168 . . . . . . . . Cmo16g00568 . . . . . Cpe14g00442 . . . . . . . . . . . . . . . . . Cone6ag0876 . . . . . . . . . . . . . . . . . Cma16g00522 . . Cpe01g00529 . . . . . . . . . . . . . . . . Csa04g00694 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001637 0 2 1 0 0 2 0 3 2 3 1 2 4 3 2 6 2 1 5 3 3 1 3 5 6 2 2 4 3 0 71