Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0884 ATGGGATCGACTGGAAGCAAACCTTCGACCGCTACGTCGTCGTCGTCTTCTTCTTCTTCTTCTCTGAGGATTCGACACAAAGGCCGTCGGATTTTCCAGTCCTCCTGCCTCGCTTGTTCTTCTAGATCTCATGATAGTGACAATGACGGCGACCAGGTTTGTAGTAACCAGAACAAAGAGAGCGAAGCTTATGCTCCATCTGCAAATCAGACTGGAACAGAGACAGATCAGACGAAGATTGATAATTACAGAGGGGTCAAACTTGACCACCAATCTGTAGAAATCCCATCTTTGTCTTCCAACATTCACCTCAATGAATGGGATCGAGCAAGGGTCCCTAATTCTTCTTCCACCCAAACTGGTTCTAGCTCAGCTCAAGATTCCTCCACTCAATCTTTGAACCCTTCAAGCAATTTTCTTTCCCGCTTTAGTTTTATTCCTGGTAATGTAAGCTTTAGATTAAGTAGAGCTACCAGTTTAGGATCTTCAAGGTCTTTTCCAGTCTCTTCAACAAGCCCCACCTCAATGTTAAACAATGAAGATGAACTTCATTCACATAGACAACCTTCTACTAGTGTTCTTCCTATAGATGAAGCTCTGCCTTCTTCAAATCATTATGGTGGTACTAGTGCTAGTTTTTCTAACATGGCTAGAGAGTGTGATAATAATAATATAAGAGTAGGGTCCGATGTAAATTTATACCCTCCAAGAATCAATGCAGAAAGCAATGAGACTAGATTACCTGATAGGCGGATTGGTGATAGAGAACCAGTTGAACGGATTGTCCGTTTTAGCCGGACATTAAGTGTAGGGAGGCTCCGAGATAGAGTACTTCGTAGATCCTCGTTATCTGACTTTACATTCTGTCCTTTACAACAAGAGAGCGAAGAGAGAGAAGGTGGGAGTCAGATTGATCAGACAAGAGTAGTAGTAGCACCAGAAGAAAATAATAATACTAGTCATAGTAATACTATGACCTCTCCAACTAGATTGGTTTATCCTCCTCCTAGCCTGTCAAACTCCTTGTTTGGCATTCAAGATTATGAGGGGGAAACTAACCAGCCGAGAGAAGCTAGATACCAGGATCTTCATGAGCATAGGTCAAATTTTCTTGAACGAAGAAGAAGGATTAGGTCTCAGGTTCGTGCACTTCAGAGACTGGGAAGTCGATTCGAGAACCTATCTGGGCATGAGAGATCATGCATATTATCTGGTCAACATAGAACAGGTCGTTGTACATGTCGAATTAATACCCGAGATGATAACATAAATGATAATAATGGTGCTAGGGCCAGTATATCAAGAATCGTGATGTTAGCAGAAGCTTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGCGGTTCTAACTGCTCGACCGTCCATTTCTTCGATTGGGTCCCTTCCTGCACCTACTGAAGCTGTGGAATCCTTGCCTGTCAAATTATACTCCAAGTTAAAGAAACACGAGACTGATGAAATCCCACAATGTTATATTTGCCTAGTAGAGTATGAAGAAGGAGACGACATGAGAATACTTCCTTGCCACCATGAATTTCACAGAACATGCGTAGATAAGTGGCTGAAAGAGATTCACAGGGTTTGTCCACTTTGCCGGAGGGATATATGCCGGTCCGAGCCGCTGTCTGTTGAGAACTAG 1662 42.72 MGSTGSKPSTATSSSSSSSSSLRIRHKGRRIFQSSCLACSSRSHDSDNDGDQVCSNQNKESEAYAPSANQTGTETDQTKIDNYRGVKLDHQSVEIPSLSSNIHLNEWDRARVPNSSSTQTGSSSAQDSSTQSLNPSSNFLSRFSFIPGNVSFRLSRATSLGSSRSFPVSSTSPTSMLNNEDELHSHRQPSTSVLPIDEALPSSNHYGGTSASFSNMARECDNNNIRVGSDVNLYPPRINAESNETRLPDRRIGDREPVERIVRFSRTLSVGRLRDRVLRRSSLSDFTFCPLQQESEEREGGSQIDQTRVVVAPEENNNTSHSNTMTSPTRLVYPPPSLSNSLFGIQDYEGETNQPREARYQDLHEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRINTRDDNINDNNGARASISRIVMLAEALFEVLDEIHQQSAVLTARPSISSIGSLPAPTEAVESLPVKLYSKLKKHETDEIPQCYICLVEYEEGDDMRILPCHHEFHRTCVDKWLKEIHRVCPLCRRDICRSEPLSVEN 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4512765 4515672 + Conep06aG0091100.1 Cone6ag0884 439768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0884 553 MobiDBLite consensus disorder prediction 161 188 - -
Cone6ag0884 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 545 IPR013083 -
Cone6ag0884 553 SMART ring_2 498 539 IPR001841 -
Cone6ag0884 553 MobiDBLite consensus disorder prediction 50 77 - -
Cone6ag0884 553 MobiDBLite consensus disorder prediction 1 22 - -
Cone6ag0884 553 MobiDBLite consensus disorder prediction 161 179 - -
Cone6ag0884 553 MobiDBLite consensus disorder prediction 1 77 - -
Cone6ag0884 553 FunFam Putative RING zinc finger domain superfamily protein 466 545 - -
Cone6ag0884 553 MobiDBLite consensus disorder prediction 112 134 - -
Cone6ag0884 553 SUPERFAMILY RING/U-box 476 545 - -
Cone6ag0884 553 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
Cone6ag0884 553 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 552 - -
Cone6ag0884 553 Pfam Ring finger domain 497 540 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0264 Cone-Chr14:1218963 Cone6ag0884 Cone-Chr6:4512765 7.71E-42 dispersed
Cone15ag0285 Cone-Chr15:1331820 Cone6ag0884 Cone-Chr6:4512765 1.82E-36 dispersed
Cone6ag0884 Cone-Chr6:4512765 Cone9ag0823 Cone-Chr9:3982397 2.47E-146 dispersed
Cone19ag0136 Cone-Chr19:730622 Cone6ag0884 Cone-Chr6:4512765 2.72E-10 transposed
Cone6ag0884 Cone-Chr6:4512765 Cone9ag0888 Cone-Chr9:4333137 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0884 - - - 0.0