Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0886 ATGACGTATAATGGCCTTGGGAGTTGCATTCTCAACAATCAAACTTATGAAAATGAAAGCAGTACAAGTAAAGGAGAGGAGTGTGTGACTGACTCCATTGAGGATTATGATTCAAGTTGCTCTTCCAGCAAAGATGTCTCTGGGTCCTTCTCTTCTCAATGGTTGAAAGTTAAAAGGGATGAGCAGGGTTCAGATGAGTGGGAACTCTCAGAAAACCCTAAACACTTTTATGTCAAAGAGAAACCTACTTATTCTATTCAAGTTTCAGATGTGGAAGCAATGAAAGATAAATTTGCAAAGCTATTGCTGGGTGAAGATATTACTGGGGGGAAGAGAGGACTTAGCACTGCTTTGGCGTTGTCTAATGCCATCACAAATCTAGCAGCAACGGTTTTTGGAGAGTTATGGAAATTGGAGCCTCTGGCCGATGAAAGGAAGAGCAAATGGAAAAAGGAAATGGGCTGGTTTCTTTCTCCTGCACACTATATGGTTGAGCTGGTTCCTGCTAAGCAAACTGGCCCCAATGGTGGGACCTTGGAGATAATGACGCCAAAAGTCCGTTCAGACATCAATGTGAATCTTCCCGCGCTTCAAAAGTTGGACACAATGCTTCTTGAGACGCTGGATTCAATGGTGAATACAGAGTTTTGGTATGCAGAAGGGGGTAGCCGAGCTGAAGGAAGGAGTAATAAAGATGAGTGGAAAACCAGGAGATGGTGGCTCCCATCACCTCGAGTTCCCACTTCTGGGCTCTCAGATACTGAAAGAAAGACCCTACTCTATCATGGCAGGGTGGTTTGTCAAGTATTCAAGGCTGCTAAATCCATCAATGAAAGCGTTCTTTCTGAAATCCCCGTGTCAGGCCTTGTCAGGGAGGCAATATGCAAGTCTGGAAAAGCAAGTATTAATGATGAGCTCCACAAGATATTGACTATAGAATCAAGTACACCCGATGAGATGCTTAATTCTCTGAATCTAAATTCCGAACACAGTGCGCTTGAGGCCATTAATAGGTTAGAAGCAACCATATTTGCATGGAAAGAGAAAAATGTAGAACAAGTTGGAGAAAAATCGCCTGTTCGTACCTCATGGTCCTCATTCATTTGGGATTCAATTTCTGAGATGGATAAGACTGAGCTCCTCTTGGACCGAGCCATAGCTCTTCATCAGCAGCTAAGAATTCGATACCCAAATCTTCCACAATCTTTTCTTGACGCCAAGAAGATCCAATATTGCAAGGATGTTGGGCATTCAATATTGGAAGCATATTCACGAGTACTCAGTAACTTGGCGTTTAGCATACTCTCTAGAATAAGAGATATACTGCAAGAGGATGCTCACAGCAATCCAAATTCGCGTGTTGAATTAACATGCTATTCTGGGATAAGTCTTCTCAATGCCCCAAACACTCCAAGTAGCAGTTGCAGTATCGAACTGTCACCACCCAGCGAGGCTAGATCAAGCTCCGTAACAGAAACACCTAGTCGAGGTCGACCTTGGTGTATTGGCAGAGAGGCTTGTATTAGTACGTCTCCTGCTACTTCACCTTGA 1551 43.52 MTYNGLGSCILNNQTYENESSTSKGEECVTDSIEDYDSSCSSSKDVSGSFSSQWLKVKRDEQGSDEWELSENPKHFYVKEKPTYSIQVSDVEAMKDKFAKLLLGEDITGGKRGLSTALALSNAITNLAATVFGELWKLEPLADERKSKWKKEMGWFLSPAHYMVELVPAKQTGPNGGTLEIMTPKVRSDINVNLPALQKLDTMLLETLDSMVNTEFWYAEGGSRAEGRSNKDEWKTRRWWLPSPRVPTSGLSDTERKTLLYHGRVVCQVFKAAKSINESVLSEIPVSGLVREAICKSGKASINDELHKILTIESSTPDEMLNSLNLNSEHSALEAINRLEATIFAWKEKNVEQVGEKSPVRTSWSSFIWDSISEMDKTELLLDRAIALHQQLRIRYPNLPQSFLDAKKIQYCKDVGHSILEAYSRVLSNLAFSILSRIRDILQEDAHSNPNSRVELTCYSGISLLNAPNTPSSSCSIELSPPSEARSSSVTETPSRGRPWCIGREACISTSPATSP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4519559 4524175 - Conep06aG0091300.1 Cone6ag0886 439770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0886 516 MobiDBLite consensus disorder prediction 469 498 - -
Cone6ag0886 516 FunFam Rop guanine nucleotide exchange factor 14 83 315 - -
Cone6ag0886 516 FunFam Rop guanine nucleotide exchange factor 14 317 454 - -
Cone6ag0886 516 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 89 448 IPR005512 GO:0005085(InterPro)
Cone6ag0886 516 ProSiteProfiles PRONE domain profile. 81 455 IPR005512 GO:0005085(InterPro)
Cone6ag0886 516 Gene3D PRONE domain, subdomain 1 322 454 - -
Cone6ag0886 516 Gene3D PRONE domain, subdomain 1 83 321 - -
Cone6ag0886 516 MobiDBLite consensus disorder prediction 469 495 - -
Cone6ag0886 516 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 3 492 IPR038937 GO:0005085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0886 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0376 Cone-Chr3:1901123 Cone6ag0886 Cone-Chr6:4519559 1.08E-100 dispersed
Cone3ag0978 Cone-Chr3:28464797 Cone6ag0886 Cone-Chr6:4519559 3.63E-103 dispersed
Cone6ag0886 Cone-Chr6:4519559 Cone9ag0890 Cone-Chr9:4339512 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g942 . . . . . Bpe07g00049 . . . . . . . . . . Cpe02g00587 . . . . . . . . . . . . . . . . Cone6ag0886 Cone9ag0890 . . . . Blo03g00905 . . . . . . Bma12g00627 . . . . . . . . Cpe06g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003226 0 5 2 2 2 0 2 1 0 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 9 2 1 49