Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0891 ATGCCGTTTTCTTGTGCGAAAAGTTACTTCCAACGTTTCTGTATGGATGAATTCCAAATGGATAGTGCAGCTCATACCAGTTCCTTCTCCACCCATCTCCTACCATCACTTGGAGCCAGAATCAACCAGACAACTCAACTTCGTCGATTTATTGTTTCACCGTTTAGTCCCCGCTATAGGGCATGGGAGAATTTGCTGGTTATTCTTGTCATTTACTCGGCTTGGATTTGCCCGTTTGAGTTTGCATTTCTACCATACAAGCAGGATGCCTTATTCATCACTGATAACATTGTCAATGCCTTCTTTGCTGTTGACATCATTCTCACCTTCTTTGTCGCTTACCTTGACAGCCAGTCCTATCTTCTTGTAGATGATCCAAAAAAAATTGCTGTCAAGTACATATCTACCTGGTTTATTTTTGATGTCTGTTCCACAGCACCATTTCAATCTCTCAGCTTCTTGTTCACAAATCATAGCAGTGAACCGGAGTTTAAAATACTCAACATGCTTAGACTTTGGAGACTCAGAAGGGTCAGCTCTTTGTTTGCAAGACTCGAGAAGGACATCCGGTTCAATTATTTCTGGATTCGATGCACAAAGCTCACTGCTGTAACCTTGTTTGCAGTACATTGTGCTGGATGCTTCAACTACCTGATTGCAGACAAATACCCTGACCCAGAAAAGACATGGATTGGCGCGATGAACCCCAATTTCAAGGATGATAGTCTTTGGAATAGATATGTAAAATCAATTTACTGGTCCATCACAACATTGACTACTACTGGTTATGGTGACTTGCATGCAGAGAACCCCAGAGAGATGCTCTTTGATATCTTTTACATGCTGTTCAACTTGGGATTGACAGCTTATATCATCGGAAACATGACAAACCTTGTAGTTCACTGGACAAGTCGCACCAGAACTTTTAGGGATACAGTGAGAGCTGCTTCAGAATTTGCATCACGAAATCAGTTGCCCCCTCACATACAGGATGAGATGTTGTCACACATATGTCTCAAATTCAAAACGGAAGGACTGAAGCAGCAGGAGACTTTAGATGGTCTGCCAAAAGCCATCCGTGCCAGCATTGCACAATTTCTCTTCTTTCCCGTTATTCAAAAAGTCTATCTCTTCCAAGGAGTTTCTCACGACTTCCTCTTCCAATTGGTCACAGATATAGAGGCCGAGTATTTCCCACCCAAAGAAGAAGTAATACTGCAGAGCGAGCCTCGGACAGATCTTTACATTCTGGTGTCAGGCAGTGTGGAAATGCTTTCCAGTATCAATGGGCAGGAACAAGTTCTTGGGAAGGCAATTGCAGGAGATGTGTTTGGAGAGGTTGGAGTCTTATGTCAGAAGCCACAACCTTTCACGGTTCGGACTACCAAGCTTTCTCAAGTACTACGAATCAAGAGGACTTCCCTGATGTATACTATTCAGTCAAATACAGAAGATGGGAACATCATGGTGAACAATCTTTTCCAGAAACTGAAAGGGCGAGAAGGCATAAGCTCTGTATACTCACATATGGATCCAGGCTTGGACCTCGGTGAATGGATGGACGGAGGAACAATTAGAGGGAGTTGTTCTAACACAGAATGTCAAGATTCTTCACCAATAGAGCAAACAAATCCCAAGGGACAAGAGGTTAGAGAACCTGGAGAAGGTAACAAAATCATAAAGGATCTCTTACTAAGACATGAAAATAGAAAAGAACCTGGAGAACATAGAATAGAGTTTAGGGAACCTCAAACAGCCAACAACGTTGTGTATGACCAAAGCAAACAAGGAAGCCGAGGAGGTTCTTTATTTTCCAGTTCCAACTTAGAAAATGCAGCCAGAAACTCATACTCAAGAACTCCTAGCTGCCACGGAGACAGAAAAACATGTATGGCCGTTAACAAGAGAGTCACTATTTACATGCAATCTCAACTTGGAAGTACAACACAAAATAATCTTGGGAAGTTAATACTCCTGCCTGATACGATAGAAGAACTTTGCAGAATAGCCAGTGAAAAATTTGGAGGCGACAAACCTGAAAAAGTCATTAGCACAGAGAATGCAGAAATAGATGACATAAGTGTCATTAGGGATGGTGATCATTTGTTTTTCATCCATAAGACGTGA 2127 42.03 MPFSCAKSYFQRFCMDEFQMDSAAHTSSFSTHLLPSLGARINQTTQLRRFIVSPFSPRYRAWENLLVILVIYSAWICPFEFAFLPYKQDALFITDNIVNAFFAVDIILTFFVAYLDSQSYLLVDDPKKIAVKYISTWFIFDVCSTAPFQSLSFLFTNHSSEPEFKILNMLRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLTAVTLFAVHCAGCFNYLIADKYPDPEKTWIGAMNPNFKDDSLWNRYVKSIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTAYIIGNMTNLVVHWTSRTRTFRDTVRAASEFASRNQLPPHIQDEMLSHICLKFKTEGLKQQETLDGLPKAIRASIAQFLFFPVIQKVYLFQGVSHDFLFQLVTDIEAEYFPPKEEVILQSEPRTDLYILVSGSVEMLSSINGQEQVLGKAIAGDVFGEVGVLCQKPQPFTVRTTKLSQVLRIKRTSLMYTIQSNTEDGNIMVNNLFQKLKGREGISSVYSHMDPGLDLGEWMDGGTIRGSCSNTECQDSSPIEQTNPKGQEVREPGEGNKIIKDLLLRHENRKEPGEHRIEFREPQTANNVVYDQSKQGSRGGSLFSSSNLENAARNSYSRTPSCHGDRKTCMAVNKRVTIYMQSQLGSTTQNNLGKLILLPDTIEELCRIASEKFGGDKPEKVISTENAEIDDISVIRDGDHLFFIHKT 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4562253 4565644 - Conep06aG0091800.1 Cone6ag0891 439775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0891 708 MobiDBLite consensus disorder prediction 571 610 - -
Cone6ag0891 708 Pfam KHA, dimerisation domain of potassium ion channel 635 704 IPR021789 -
Cone6ag0891 708 CDD CAP_ED 377 490 IPR000595 -
Cone6ag0891 708 Pfam Ion transport protein 59 306 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0891 708 MobiDBLite consensus disorder prediction 530 556 - -
Cone6ag0891 708 FunFam Potassium channel KAT3 61 301 - -
Cone6ag0891 708 PANTHER POTASSIUM CHANNEL AKT1 10 501 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cone6ag0891 708 SUPERFAMILY cAMP-binding domain-like 304 497 IPR018490 -
Cone6ag0891 708 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Cone6ag0891 708 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone6ag0891 708 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone6ag0891 708 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone6ag0891 708 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone6ag0891 708 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone6ag0891 708 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone6ag0891 708 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Cone6ag0891 708 MobiDBLite consensus disorder prediction 530 545 - -
Cone6ag0891 708 Gene3D Jelly Rolls 344 505 IPR014710 -
Cone6ag0891 708 MobiDBLite consensus disorder prediction 586 610 - -
Cone6ag0891 708 ProSiteProfiles KHA domain profile. 636 708 IPR021789 -
Cone6ag0891 708 SMART cnmp_10 377 494 IPR000595 -
Cone6ag0891 708 Pfam Cyclic nucleotide-binding domain 396 481 IPR000595 -
Cone6ag0891 708 FunFam Potassium channel KAT2 365 501 - -
Cone6ag0891 708 Gene3D - 61 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0903 Cone-Chr10:4677144 Cone6ag0891 Cone-Chr6:4562253 4.33E-166 dispersed
Cone3ag0931 Cone-Chr3:4806261 Cone6ag0891 Cone-Chr6:4562253 7.26E-169 dispersed
Cone4ag0695 Cone-Chr4:3541652 Cone6ag0891 Cone-Chr6:4562253 2.02E-214 dispersed
Cone6ag0891 Cone-Chr6:4562253 Cone7ag0655 Cone-Chr7:3406157 7.67E-213 dispersed
Cone5ag1593 Cone-Chr5:11198970 Cone6ag0891 Cone-Chr6:4562253 4.10E-243 wgd
Cone6ag0891 Cone-Chr6:4562253 Cone9ag0896 Cone-Chr9:4384732 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0891 K21867 - gmx:100800340 920.228