Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0906 ATGGCCGCTTCAACAATGGCTCTCTCTTCTCCATCATTTTCCGGACAGGCAGTAAAAGTCGCTCCCTCCGGCTCGGACCTCCTCGGAAACGGTAGAGTCAGCATGAGGAAAACTGCTACCAAGAAAGTTTCCTCAGGAAGCCCATGGTACGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGCGAGGCTCCATCTTACCTTACCGGAGAATTCCCCGGTGACTACGGCTGGGACACTGCCGGGCTTTCAGCCGACCCAGAGACATTCGCCAAGAACCGTGAGCTTGAAGTGATCCATTCAAGATGGGCCATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGCAACGGTGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCCGGAGCCCAAATCTTCAGCGAAGGTGGACTCGACTACTTGGGCAATCCCAGCTTGATCCACGCCCAAAGCATCTTAGCAATTTGGGCCACACAAGTGATCTTGATGGGTGCGGTTGAGGGATACCGTGTTGCAGGTGGGCCACTTGGAGAGGTGACGGATCCGCTATACCCAGGTGGAAGCTTTGACCCATTGGGCCTGGCGGAGGATCCAGAGGCTTTTGCTGAGTTGAAGGTGAAGGAGCTCAAGAATGGAAGGCTAGCCATGTTTTCTATGTTTGGATTCTTCGTACAAGCTATTGTGACGGGAAAGGGCCCACTAGAGAACCTAGCCGACCACCTTGCAGACCCGGTCAGCAACAACGCATGGGCCTATGCCACAAACTTTGTACCCGGAAAATGA 798 54.51 MAASTMALSSPSFSGQAVKVAPSGSDLLGNGRVSMRKTATKKVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRVAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVSNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4652083 4653635 + Conep06aG0093400.1 Cone6ag0906 439790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0906 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cone6ag0906 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cone6ag0906 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cone6ag0906 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cone6ag0906 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0729 Cone-Chr11:5047940 Cone6ag0906 Cone-Chr6:4652083 2.50E-13 dispersed
Cone4ag0090 Cone-Chr4:436412 Cone6ag0906 Cone-Chr6:4652083 1.35E-71 dispersed
Cone6ag0906 Cone-Chr6:4652083 Cone9ag0914 Cone-Chr9:4485407 1.92E-191 dispersed
Cone8ag1383 Cone-Chr8:10959263 Cone6ag0906 Cone-Chr6:4652083 3.83E-152 transposed
Cone1ag0250 Cone-Chr1:1666782 Cone6ag0906 Cone-Chr6:4652083 5.44E-180 wgd
Cone6ag0906 Cone-Chr6:4652083 Cone9ag0912 Cone-Chr9:4480977 1.92E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0906 K08912 - mdm:103419710 515.768