Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0908 ATGTCTAATGAGCTGAGTGACATTTACTATCAAAACCCATTTCAAGCTCAAGGCCATAACAGTCAAGACATGATATCTTCTTCTTCCATGAATGTTTCAGCTGGTTCATCATCATCATCACCACCATATAACAGTCACAACTATCTCCAACCTTTTGATCCTAATTATCACTCATACAGCATGATGATGGGCTTCACCAACTATTTACAATCTGATCCAATGGAGTACTACTGCCACTCCCTCTCAAAATCTTTTGGTCTAACATCTCCTGCTTCCAAACCATTTTCGTCCGTCGATGCAGATCAAGAAGTTGATCATCATCACGATCTTGATTTAAAGCCGCTCCATTCTCATTGTAAGGACGTCCCGGTAAGTACTTTCATGTCTTCCTCTTCTTCTGAAGCTCATGCCGATCAAGAGATCTCGGGTGGGAATAGTACCACTAAGAACGACAACCAACTGAAAGGGGACATATTGGAAGAAGGAGAAGAAAGCTCTAAGAAAGAAAGCAAAGGGGGAAAGAAGAAAGGAGAGAAGAAGCAAAAAGAGGCAAGATTTTCTTTCATGACAAAGAGTGAGGTTGATCATTTAGAAGATGGATATAGATGGAGAAAGTATGGTCAGAAGGCTGTCAAGAATAGCCCTTACCCAAGAAGCTACTACAGGTGCACAAGTCAAAAATGCATGGTGAAGAAACGTGTGGAGAGGTCATTCCAAGATCCAACAATTGTGATCACAACTTATGAAGGCCAACACAACCATCCAATTCCAACAACACTTAGAGGAAATTATAATTATAATTATAATCATAATTTGCCTGATTATTCTGGTATTTTTCAACCTACTAATAATACTACTCTTCTAACACCGCAAGCTGTACCTCTGCAAATGCCGGGTCAAACTTGCATTCCTCCTCTTCCTTCTCCTTATGATCATGATGATGATTACATGATCGATAGCCCTCATCATCATCGCCACAATAATTATCAACCTGATCCTGATCATCATCATCATCATCATTATGGGCTCTTGTATGACCACATAGATTCTTCCATGTTCCTTAAACCTGATCACCCATCAGATCAATGA 1089 39.94 MSNELSDIYYQNPFQAQGHNSQDMISSSSMNVSAGSSSSSPPYNSHNYLQPFDPNYHSYSMMMGFTNYLQSDPMEYYCHSLSKSFGLTSPASKPFSSVDADQEVDHHHDLDLKPLHSHCKDVPVSTFMSSSSSEAHADQEISGGNSTTKNDNQLKGDILEEGEESSKKESKGGKKKGEKKQKEARFSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCMVKKRVERSFQDPTIVITTYEGQHNHPIPTTLRGNYNYNYNHNLPDYSGIFQPTNNTTLLTPQAVPLQMPGQTCIPPLPSPYDHDDDYMIDSPHHHRHNNYQPDPDHHHHHHYGLLYDHIDSSMFLKPDHPSDQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4663736 4665107 - Conep06aG0093600.1 Cone6ag0908 439792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0908 362 MobiDBLite consensus disorder prediction 318 340 - -
Cone6ag0908 362 SMART WRKY_cls 197 256 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0908 362 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 263 IPR044810 GO:0003700(InterPro)
Cone6ag0908 362 MobiDBLite consensus disorder prediction 154 184 - -
Cone6ag0908 362 ProSiteProfiles WRKY domain profile. 192 257 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0908 362 Pfam WRKY DNA -binding domain 198 255 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0908 362 SUPERFAMILY WRKY DNA-binding domain 189 257 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0908 362 MobiDBLite consensus disorder prediction 123 184 - -
Cone6ag0908 362 Gene3D WRKY domain 181 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0908 362 MobiDBLite consensus disorder prediction 123 153 - -
Cone6ag0908 362 FunFam WRKY transcription factor 57 183 257 - -
Cone6ag0908 362 MobiDBLite consensus disorder prediction 19 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1011 Cone-Chr20:7094584 Cone6ag0908 Cone-Chr6:4663736 3.59E-38 dispersed
Cone4ag0098 Cone-Chr4:473724 Cone6ag0908 Cone-Chr6:4663736 5.29E-35 dispersed
Cone6ag0541 Cone-Chr6:2670377 Cone6ag0908 Cone-Chr6:4663736 1.52E-34 dispersed
Cone6ag0908 Cone-Chr6:4663736 Cone9ag0551 Cone-Chr9:2624393 2.08E-33 dispersed
Cone1ag0248 Cone-Chr1:1653400 Cone6ag0908 Cone-Chr6:4663736 8.97E-44 wgd
Cone10ag1424 Cone-Chr10:11017299 Cone6ag0908 Cone-Chr6:4663736 2.96E-44 wgd
Cone5ag1608 Cone-Chr5:11290360 Cone6ag0908 Cone-Chr6:4663736 3.04E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46343 PF02365 NAM 7.30E-38 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0908 - - - 0.0