Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0928 ATGTTAGAGGCAATCAAACCTGCCGCTGCTCATGAGGAGGTGATCAATTCTACTACAAGCCTTAACCCTAGGGTTAGAGGAAACGATGAAAACGAGGAGGAGCCTGAGGAGGGAGAGATCGTAGGAGACACTGATTCGACGTCGTCGGCGGTAGGTCGGTCGCTGCATCCTCTGGAATTTTCATGGACCTTCTGGTTCGATAATCCCTCCGTTAGGCCCAAGCAAGCTGCCTGGGGTAGCTCCCTCCGCCCGATCTATACATTCTCCACTGTCGAGGATTTTTGGGGCGTTTACAACAACATTCATCATCCAAGCAAGTTAGCTCTGAAAGCGGATTTGTATTGTTTCAAGCATAATATCGAACCAATATGGGAGGATCCTATTTGTGTGACTGGAGGGAAGTGGACTGTAACCACTATTAGAGGAAAATCTGATACTTATTGGCTATATACGTTGCTTGCAATGATCGGAGAGCAGTTTGATCACGGGGATGAAATTTGTGGGGCTGTTGTTAATGTTAGAAACAAAGAGGACAAAGTTTCTATCTGGACCAGGAATGCTTCTAATGAATCAGCTCAGGTGAGCATTGGGAAACAGTGGAAGGAGTGCCTCGATTATAGTGAAACCATAGGATTTATATTCCACGAGGACGCTATTAAATTGGACAGAAACGCAAAGAGCCGCTACACAACATGA 696 45.98 MLEAIKPAAAHEEVINSTTSLNPRVRGNDENEEEPEEGEIVGDTDSTSSAVGRSLHPLEFSWTFWFDNPSVRPKQAAWGSSLRPIYTFSTVEDFWGVYNNIHHPSKLALKADLYCFKHNIEPIWEDPICVTGGKWTVTTIRGKSDTYWLYTLLAMIGEQFDHGDEICGAVVNVRNKEDKVSIWTRNASNESAQVSIGKQWKECLDYSETIGFIFHEDAIKLDRNAKSRYTT 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4749111 4751457 + Conep06aG0095600.1 Cone6ag0928 439812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0928 231 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 31 220 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Cone6ag0928 231 MobiDBLite consensus disorder prediction 13 50 - -
Cone6ag0928 231 ProSitePatterns Eukaryotic initiation factor 4E signature. 112 135 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Cone6ag0928 231 SUPERFAMILY eIF4e-like 31 226 IPR023398 -
Cone6ag0928 231 Gene3D RNA Cap, Translation Initiation Factor Eif4e 48 231 IPR023398 -
Cone6ag0928 231 Pfam Eukaryotic initiation factor 4E 57 209 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cone6ag0928 231 FunFam Eukaryotic translation initiation factor 4E 47 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0175 Cone-Chr14:814931 Cone6ag0928 Cone-Chr6:4749111 3.76E-67 dispersed
Cone4ag0359 Cone-Chr4:1630709 Cone6ag0928 Cone-Chr6:4749111 1.86E-64 dispersed
Cone6ag0928 Cone-Chr6:4749111 Cone7ag0345 Cone-Chr7:1505292 1.96E-70 dispersed
Cone19ag0360 Cone-Chr19:2988873 Cone6ag0928 Cone-Chr6:4749111 5.18E-36 transposed
Cone6ag0928 Cone-Chr6:4749111 Cone9ag0931 Cone-Chr9:4570020 4.90E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0928 K03259 - csv:101206312 333.954