Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0933 ATGGCATACCAAGACCAGATTCAAAACCAATCTCTGTCACTCTCTCCTCAGAGAAAAATTGGTAGGGGAAAGATTGAGATCAAGCGGATCGAGAACACGACAAACCGGCAAGTGACTTTCTGCAAACGGCGCAATGGTTTGCTCAAGAAAGCTTACGAGCTCTCGGTTCTCTGTGATGCCGAGGTTGCTCTTGTCGTTTTCTCTAGCCGTGGCCGACTATATGAATATGCTAGCAACAGTGTGAAAGAAACTATCGAGAGGTACAAGAAGGCGTCTTCCGATACCGCCAACACCGGCTCCATTGCGGAAATTAATGCCGAATTTTATCAGAAAGAAGCTGCCAAACTGCGTACACATATTAGCAATTTACAGAATTCAAACAGGCAAATGTTGGGAGACTCATTGAGCCCATTGTGCATGAGGGATCTAAAATCACTGGAGGGCAAATTGGAGAAAGGAATTAGCAGAATCAGATCCAAAAAGAATGAGCTCTTGTTTGCAGAAATTGAGTACATGCAGAAAAGGGAAAATGATCTGCACAACACTAACCAGCTGATCCGAGCCAAGATAGCTGAGAACGAGAGAAGCCAGCAAAATGGCAATATGATAGCAGGAGGAAGTGGGGCGGGGCCTAATCACAATTATGAGCTAATCCACAACCAGCATCATCCTCATCATAATCATAACCATCAATATCATGACTCCCGTAACTATTTTGAAGTGAATGCTTTGCAACCCATCACTACTACTACGGCTGCCACTGCTTCAACTCCTACTTCTCTTCACTACCCTCGCCAAGACCAAATGCCGCTTCAATTAGTGTAA 825 44.61 MAYQDQIQNQSLSLSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYASNSVKETIERYKKASSDTANTGSIAEINAEFYQKEAAKLRTHISNLQNSNRQMLGDSLSPLCMRDLKSLEGKLEKGISRIRSKKNELLFAEIEYMQKRENDLHNTNQLIRAKIAENERSQQNGNMIAGGSGAGPNHNYELIHNQHHPHHNHNHQYHDSRNYFEVNALQPITTTTAATASTPTSLHYPRQDQMPLQLV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4798470 4802870 - Conep06aG0096300.1 Cone6ag0933 439817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0933 274 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone6ag0933 274 Coils Coil 106 126 - -
Cone6ag0933 274 MobiDBLite consensus disorder prediction 251 274 - -
Cone6ag0933 274 FunFam agamous-like MADS-box protein AGL11 32 115 - -
Cone6ag0933 274 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag0933 274 Pfam K-box region 105 190 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone6ag0933 274 Coils Coil 143 163 - -
Cone6ag0933 274 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag0933 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag0933 274 MobiDBLite consensus disorder prediction 251 266 - -
Cone6ag0933 274 Gene3D - 32 127 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag0933 274 SUPERFAMILY SRF-like 21 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag0933 274 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 230 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone6ag0933 274 CDD MADS_MEF2_like 21 97 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone6ag0933 274 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag0933 274 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag0933 274 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag0933 274 SMART madsneu2 20 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0346 Cone-Chr15:1607150 Cone6ag0933 Cone-Chr6:4798470 1.03E-41 dispersed
Cone17ag0728 Cone-Chr17:5336181 Cone6ag0933 Cone-Chr6:4798470 7.27E-71 dispersed
Cone18ag1119 Cone-Chr18:8126848 Cone6ag0933 Cone-Chr6:4798470 4.46E-38 dispersed
Cone1ag1119 Cone-Chr1:55564708 Cone6ag0933 Cone-Chr6:4798470 1.20E-38 dispersed
Cone20ag0564 Cone-Chr20:3151511 Cone6ag0933 Cone-Chr6:4798470 7.17E-41 dispersed
Cone3ag0043 Cone-Chr3:268129 Cone6ag0933 Cone-Chr6:4798470 1.07E-30 dispersed
Cone4ag1281 Cone-Chr4:10526697 Cone6ag0933 Cone-Chr6:4798470 1.44E-41 dispersed
Cone4ag1298 Cone-Chr4:10714434 Cone6ag0933 Cone-Chr6:4798470 7.53E-25 dispersed
Cone6ag0933 Cone-Chr6:4798470 Cone9ag1445 Cone-Chr9:10720623 1.59E-31 dispersed
Cone6ag1100 Cone-Chr6:6826055 Cone6ag0933 Cone-Chr6:4798470 2.78E-32 transposed
Cone10ag1416 Cone-Chr10:10986119 Cone6ag0933 Cone-Chr6:4798470 4.57E-82 wgd
Cone5ag1630 Cone-Chr5:11505545 Cone6ag0933 Cone-Chr6:4798470 1.22E-44 wgd
Cone6ag0933 Cone-Chr6:4798470 Cone9ag0936 Cone-Chr9:4616470 2.23E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46344 PF00875 DNA_photolyase 1.50E-25 CL0039 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0933 K09264 - cit:102617808 342.428