Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0936 ATGCACTGGGTTAATCGCTTTGTTTTCATAATCTTATCATTGGGTTGCTTCAGTTTGCTCAGATTTGCAGACTCCAAGCTTCCACAGCAAGAAGTTGATGCTCTGGAACAAATCACGAGCGCAATGGGTGCAACATATTGGAACTTCAATGCCGATTCTTGTGAAATTGAAACGGTCGGCTTAACACCCGAACCACCAACTGGATCCGAGAGCAAAATCGTTTGTGATTGTTACTTTGAGAATAATACAGTCTGCCATGTCGTAAAAATAGTGCTCAAGGGTTATAGTCTACCCGGCATGCTTCCACCTCAGCTGGTCAAATTTCCCCATCTCCAAGAGATTGATTTTGCGTACAACTATCTCAATGGTACTATACCAAAAGAATGGGGTTCCATGCAGTTAACTTCAATCTCTGTGCTTGTAAACCGGTTATCGGGGAAAATTCCGAAGGAATTGGGAAATATTACTACTCTTACATACCTCTGCCTTGAAGCAAATCAATTTTTGGGTCCTGTTCCACTCGAGCTGGGAAATTTGAGCAGCCTCCAAACCTTGATCCTGTCGTCTAATCGATTGACTGGAAACTTGCCGGGGACATTTTCTGGGTTAAGAAATCTTACAGATTTTAGGATAAATGACAACTTCTTCATTGGAACCATACCGAATTTCATACAGAATTGGAAACTACTCGAAAGATTAGAAATGCATGCAAGTGGACTTGAGGGACCCATACCTGCAAACATAGCTCTTTTGAGTAATTTACAAGAGCTGAGGATCAGTGATATTAATGGGCCGAAGCAGGGTTTTCCGATTTTGAAAGACATGACAGGCATAGTAAGACTGGTCTTGAGAAATTGTAACATTTCTGGAAAGGTCCCTCCTTATATCTGGACAATGAAGAATATAGAAATGTTGGATCTTAGCTTTAACCACTTGACTGGGGAGATTCCGGATAATATAAACTTAGGGCGGCTTAGATTTCTGTTTTTAACTGGAAACATGTTAAGTGGAAATGTACCAAGCTCAATTCTGAAAGATGGAAGTAATGTTGATCTTTCATATAACAACTTCACTTGGCAAAACCCCGAGCAATCTGCTTGTCGGGAAAACATGAACTTAAACCTGAATTTGTTTCGAAGCTCGTTAACTCGAAACAACTCAGGAGAAGGCCGCCTTCCTTGTTTGAAGAATTTCAACTGTCAAAGATATTCACATTGTTTTGGTGTCAATTGTGGTGGAAAGGATCTAACATTAAAGGAAAATAAACAAACTGTTATATACAAAGGGGATGGGAATGTTGAAGGTGGTTCAGCTGAATACTTCATTGATCAGACTAGTTATTGGGGATTAAGTAGTACTGGAGACTATATGGATGATTTTGATTATCAAAATACCCGATTTTCCGTATCTCTACTACCGTCATCAAGTTTGTCCGAACCATATTCGACGGCTCGTATTGCTCCAGTTTCTCTCACTTATTTCCATTACTGCTTGGAAAATGGAAACTACACAGTCAATCTTCACTTTGCCGAGATACAATTTACAAATGACTTGTCATATAAGAGTATTGGGAGGCGGGTTTTTGACATCTATGTTCAGGAAAGATTAGTGTGGAAGAATTTTGATATTGAAGAACGGACTAATCTTGCTCAAAAGCCAGTAGTAATACAAGTACCTAATGTTAGTGTGACGGATAATTTCATAGAAATCAGATTCTATTGGGCTGGAAAGGGAACAACAAGGATTCCTAAAAGAGGAGTTTATGGTCCTCTCATATCTGCAATTTCTGTTGTTTCTGATTCTAAAATTTGTTCAGAGAGTGAAACCAAACCAACTGTTTATATCATTGCTGGAGTAGTGGGATCATTTTTCATAGCATTCACTGTATTGGGACTATTCCATTGGCGAAGATTCTTCCATGGAGGAAAAAGGCAGGGGAGAAAGAAAGATCTGAGAGGACCCGAATTGCTGACTGGGACTTTTACGTTGAAACAAATAAATGCTTCCACAAACAACTTTGATCCTGTTAACAAGATAGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCGATTATCAGATGGTACTGTTATAGCAGTTAAGCAGTTATCGTCGAAATCAAAGCAGGGTAATCGGGAATTTTTAAACGAGATAGGAATGATATCTTGTCTGCAACACCCAAATCTAGTTAAGCTTTATGGATGTTGTATTGAAGGTGATCAACTTTTGCTGGTTTATGAATACATGGAGAATAACAGCCTTGCTCGTGCTCTATTCGAATGCAACCAGCTAAAGCTAGATTGGCATACGAGGCATAAGATCTGTGTCGGGATAGCAAAAGGTCTAGCTTTTCTCCATGAAGAATCCAGACTCAAAATTGTTCATAGAGACATCAAAGCTACTAATGTGCTTCTTGACGGGGACTTAAACCCTAAAATATCTGATTTCGGATTAGCTAAGCTCGATGAAGAGGGAAAGACACACATTAGCACCCGAGTAGCCGGGACCATAGGTTATATGGCTCCGGAATATGCACTATGGGGTTACCTGACCCACAAAGTAGATGTTTACAGTTTTGGCATTGTGGCAATGGAAATCATTAGTGGGAAGAAGAACAATGATTACATACCGAGTGAAGATTGTGTTTGCCTTCTAGATTGGGCATGCCAAATGCAGCAAAGTGGAAACTTAATGGAGTTAATTGATGAGAAGTTAAGGGGCGAAGTTGAAAGAACGGGGGCGGAAAATATGGTGAAAATAGCTCTCGTATGCACAAATGCATCTCCATCACTAAGGCCTTGTATGTCCGAGGTAGTAGGGATGCTCGAAGGAAGAACATCTATTCCGGACATAATCCCGAATCCGAGCGGTTATACTGAAGATCTACGGTTCAAGGCCATGAGAGATTTTCGTAGACAAGAACGGGATCAAAGTTTGAGTAGAAGCCAGACTCATAATTCGACGACTGGCCACACATTCTACTCGTCCTCTCCGTCCACCCGTGATTTGTATGAAATATATCCAGAAACAAGAACCTCTTGA 3042 40.43 MHWVNRFVFIILSLGCFSLLRFADSKLPQQEVDALEQITSAMGATYWNFNADSCEIETVGLTPEPPTGSESKIVCDCYFENNTVCHVVKIVLKGYSLPGMLPPQLVKFPHLQEIDFAYNYLNGTIPKEWGSMQLTSISVLVNRLSGKIPKELGNITTLTYLCLEANQFLGPVPLELGNLSSLQTLILSSNRLTGNLPGTFSGLRNLTDFRINDNFFIGTIPNFIQNWKLLERLEMHASGLEGPIPANIALLSNLQELRISDINGPKQGFPILKDMTGIVRLVLRNCNISGKVPPYIWTMKNIEMLDLSFNHLTGEIPDNINLGRLRFLFLTGNMLSGNVPSSILKDGSNVDLSYNNFTWQNPEQSACRENMNLNLNLFRSSLTRNNSGEGRLPCLKNFNCQRYSHCFGVNCGGKDLTLKENKQTVIYKGDGNVEGGSAEYFIDQTSYWGLSSTGDYMDDFDYQNTRFSVSLLPSSSLSEPYSTARIAPVSLTYFHYCLENGNYTVNLHFAEIQFTNDLSYKSIGRRVFDIYVQERLVWKNFDIEERTNLAQKPVVIQVPNVSVTDNFIEIRFYWAGKGTTRIPKRGVYGPLISAISVVSDSKICSESETKPTVYIIAGVVGSFFIAFTVLGLFHWRRFFHGGKRQGRKKDLRGPELLTGTFTLKQINASTNNFDPVNKIGEGGFGPVYKGRLSDGTVIAVKQLSSKSKQGNREFLNEIGMISCLQHPNLVKLYGCCIEGDQLLLVYEYMENNSLARALFECNQLKLDWHTRHKICVGIAKGLAFLHEESRLKIVHRDIKATNVLLDGDLNPKISDFGLAKLDEEGKTHISTRVAGTIGYMAPEYALWGYLTHKVDVYSFGIVAMEIISGKKNNDYIPSEDCVCLLDWACQMQQSGNLMELIDEKLRGEVERTGAENMVKIALVCTNASPSLRPCMSEVVGMLEGRTSIPDIIPNPSGYTEDLRFKAMRDFRRQERDQSLSRSQTHNSTTGHTFYSSSPSTRDLYEIYPETRTS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4814838 4821211 - Conep06aG0096600.1 Cone6ag0936 439820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0936 1013 Pfam Leucine Rich Repeat 301 320 IPR001611 GO:0005515(InterPro)
Cone6ag0936 1013 Pfam Leucine Rich Repeat 181 203 IPR001611 GO:0005515(InterPro)
Cone6ag0936 1013 Gene3D Phosphorylase Kinase; domain 1 643 748 - -
Cone6ag0936 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0936 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Cone6ag0936 1013 Gene3D Ribonuclease Inhibitor 197 267 IPR032675 -
Cone6ag0936 1013 MobiDBLite consensus disorder prediction 973 1013 - -
Cone6ag0936 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
Cone6ag0936 1013 CDD STKc_IRAK 679 944 - -
Cone6ag0936 1013 Gene3D Ribonuclease Inhibitor 29 196 IPR032675 -
Cone6ag0936 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 749 953 - -
Cone6ag0936 1013 Pfam Malectin domain 406 595 IPR021720 -
Cone6ag0936 1013 ProSiteProfiles Protein kinase domain profile. 673 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0936 1013 Gene3D - 404 602 - -
Cone6ag0936 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 642 748 - -
Cone6ag0936 1013 SMART LRR_typ_2 299 323 IPR003591 -
Cone6ag0936 1013 SMART LRR_typ_2 179 202 IPR003591 -
Cone6ag0936 1013 Gene3D Ribonuclease Inhibitor 268 387 IPR032675 -
Cone6ag0936 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 386 - -
Cone6ag0936 1013 MobiDBLite consensus disorder prediction 980 1013 - -
Cone6ag0936 1013 Pfam Protein tyrosine and serine/threonine kinase 677 941 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0936 1013 SUPERFAMILY Protein kinase-like (PK-like) 658 943 IPR011009 -
Cone6ag0936 1013 SUPERFAMILY L domain-like 81 358 - -
Cone6ag0936 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 600 - -
Cone6ag0936 1013 Gene3D Transferase(Phosphotransferase) domain 1 749 949 - -
Cone6ag0936 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 968 IPR051824 -
Cone6ag0936 1013 SMART serkin_6 673 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0206 Cone-Chr6:969913 Cone6ag0936 Cone-Chr6:4814838 1.10E-217 dispersed
Cone6ag0936 Cone-Chr6:4814838 Cone9ag0235 Cone-Chr9:991865 2.07E-229 dispersed
Cone9ag0939 Cone-Chr9:4642129 Cone6ag0936 Cone-Chr6:4814838 1.06E-67 transposed
Cone1ag0229 Cone-Chr1:1463415 Cone6ag0936 Cone-Chr6:4814838 0 wgd
Cone10ag1407 Cone-Chr10:10929164 Cone6ag0936 Cone-Chr6:4814838 1.28E-219 wgd
Cone5ag1634 Cone-Chr5:11537601 Cone6ag0936 Cone-Chr6:4814838 3.69E-234 wgd
Cone6ag0936 Cone-Chr6:4814838 Cone7ag0447 Cone-Chr7:2023055 1.71E-35 wgd
Cone6ag0936 Cone-Chr6:4814838 Cone9ag0938 Cone-Chr9:4639911 1.31E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82935 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0936 - - - 0.0