Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0938 ATGGCAGAAACTGCAGCTGGTAATGGAAACCATGGAGTTGTTGTGAACGTCAAAGATGATGATCTCAATCACAACTCCTCCAGTTTTGTCTCCATACCTTTCCTTCAAAAGATGATTGCAGAGATGTTGGGCACATATTTCTTGATATTCGCAGGGTGTGCATCAGTTGTGGTGAATCTGAGTGAAGACAAAGTGATCACTTTCCCTGGGATTTCTATTGTCTGGGGTCTTGTTGTCATGGTCATGATCTATTCAGTCGGTCATATTTCTGGCGCTCACTTTAACCCTGCTGTCACCATTGCCTTTGCCACTACCAAGAGATTCCCATGGAAACAGGTGCCAGCATATTTATCATCACAAATCCTTGGATCAACACTAGCAAGTGGGACCCTTAGACTACTATTCAATGGAAAGCAAGACCATTTCGCCGGAACCCTTCCATCCGGGTCGGACATCCAGTCGTTTGTGATCGAGTTCATTATCACATTTTACCTCATGTTTGTCGTATCGGGTGTCGCTACCGATAATCGCGCGATTGGTGAACTTGCTGGCCTTGCCGTTGGCTCAACAGTGCTGCTTAACGTGATGTTTGCTGGACCCATTTCTGGAGCGTCGATGAATCCGGCAAGAAGCCTGGGTCCTGCAATAGTGGAAAACCATTATAAAGGGATATGGATATATCTTTTGGCGCCAACTCTGGGTGCAATTTCAGGTGCATGGGTCTATAATCTCATAAGGTTTACAAACAAGCCTTTGAGAGAGATCACCAAGAGTGGCTCTTTCCTGAAAGGAGTTGGTCGTTCTGGCTCTGCTAATTGA 819 45.67 MAETAAGNGNHGVVVNVKDDDLNHNSSSFVSIPFLQKMIAEMLGTYFLIFAGCASVVVNLSEDKVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYLSSQILGSTLASGTLRLLFNGKQDHFAGTLPSGSDIQSFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGSTVLLNVMFAGPISGASMNPARSLGPAIVENHYKGIWIYLLAPTLGAISGAWVYNLIRFTNKPLREITKSGSFLKGVGRSGSAN 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4829715 4831749 - Conep06aG0096800.1 Cone6ag0938 439822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0938 272 Pfam Major intrinsic protein 30 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0938 272 CDD MIP 36 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0938 272 SUPERFAMILY Aquaporin-like 30 256 IPR023271 -
Cone6ag0938 272 NCBIfam MIP family channel protein 40 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0938 272 Gene3D Glycerol uptake facilitator protein. 10 257 IPR023271 -
Cone6ag0938 272 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0938 272 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0938 272 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0938 272 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0938 272 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0938 272 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag0938 272 PANTHER AQUAPORIN NIP2-1 24 250 IPR034294 -
Cone6ag0938 272 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Cone6ag0938 272 FunFam Aquaporin NIP1-1 8 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0938 Cone-Chr6:4829715 Cone8ag0521 Cone-Chr8:3729290 4.55E-62 dispersed
Cone18ag1202 Cone-Chr18:8571293 Cone6ag0938 Cone-Chr6:4829715 3.34E-103 transposed
Cone5ag1638 Cone-Chr5:11560497 Cone6ag0938 Cone-Chr6:4829715 1.34E-127 wgd
Cone6ag0938 Cone-Chr6:4829715 Cone9ag0941 Cone-Chr9:4650979 4.15E-187 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0938 K09874 - vvi:100263543 435.261