Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0940 ATGACGTCGGGAACGAGAATGCCGACGTGGAAAGAGAGGGAGAACAACAAGAGGAGAGAAAGACGTCGTAGAGCGATCGCGGCGAAGATCTTCGCCGGACTGAGGATGTACGGAAACTACAAGCTTCCCAAGCACTGCGACAACAACGAGGTTCTAAAAGCTCTCTGCAACGAAGCCGGCTGGACAGTGGAAGAAGACGGTACTACCTACAGAAAGGGATGCAAACCATTGGAAAGCATGGACATGGTAGGCGGGTCAGCTTCTGCAAGTCCATGCTCATCATACCAGCCAAGCCCATGTGCATCGCACAATCCAAGTCCTGGCTCATCTTCCTTTCCAAGCCCAACTTCATCTCGATACACCGTTAAAGCCAATAATGGCAACGCCGATCCTAATTCCCTTATCCCATGGCTGAAGAACCTCTCATCAGGCTCATCATCATCATCCTCATCAAAGATGGCCCACCAACTGTACATCCCTGGTTGCTCCATAAGTGCTCCAGTCACTCCTCCTCTAAGCTCTCCAACTGCTCGAAGCCCACGTACCAAGAATGATTGGGATGATCTGACGGCTAGTGCTGCATGGGCCGCACAACACTTCTCTTACCAGCCCTCTTCAACCCCACCAAGCCCAGGCCGTCAGGTTTTTCCTGATCCAGGTTGGCTTTCTGGGATCCGAATACCCCAAAGCGGGCCATCGTCTCCTACATTTAGCCTTGTGTCACGAAATCCGTTTATTTCTAGGGAGGAGGCTCTGTCTGGTGCTGGGTCTAGGATGTGGACCCCGGGACAAAGTGGGACATGTTCTCCTGCTGTCACAGCAGGTCTCGATCAGACAGCTGATGTTCCGATGTCTGATGGGATTGCAACCGAGTTTGCATTTGGTAGCAATACGACAGGTTTGGTCAAGCCATGGGAAGGAGAGAGGATCCATGAGGAATGTGTTTCGGATGATCTTGAACTCACCCTTGGCAGCTCAAGAACTAGATAA 990 51.62 MTSGTRMPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPLESMDMVGGSASASPCSSYQPSPCASHNPSPGSSSFPSPTSSRYTVKANNGNADPNSLIPWLKNLSSGSSSSSSSKMAHQLYIPGCSISAPVTPPLSSPTARSPRTKNDWDDLTASAAWAAQHFSYQPSSTPPSPGRQVFPDPGWLSGIRIPQSGPSSPTFSLVSRNPFISREEALSGAGSRMWTPGQSGTCSPAVTAGLDQTADVPMSDGIATEFAFGSNTTGLVKPWEGERIHEECVSDDLELTLGSSRTR 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4839207 4841982 - Conep06aG0097000.1 Cone6ag0940 439824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0940 329 MobiDBLite consensus disorder prediction 1 21 - -
Cone6ag0940 329 MobiDBLite consensus disorder prediction 94 126 - -
Cone6ag0940 329 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 329 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cone6ag0940 329 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 142 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0940 Cone-Chr6:4839207 Cone7ag1804 Cone-Chr7:11802434 7.21E-54 dispersed
Cone6ag0204 Cone-Chr6:962545 Cone6ag0940 Cone-Chr6:4839207 1.51E-130 transposed
Cone6ag0940 Cone-Chr6:4839207 Cone9ag0944 Cone-Chr9:4662970 4.24E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46345 PF01842 ACT 6.50E-07 CL0070 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0940 - - - 0.0