Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0945 ATGGAGGCAGGGGCTCCAATATGCCACACTTGTGGTGAGCAAGTTGGAGTTGATGCCAATGGTGATGTTTTCATTGCCTGCCATGAATGCAATTTCCCCATTTGTAAAGTCTGTTTTGAGTACGAGCTCAAAGATGGCCGCAAAGCTTGTTTCCGGTGTGGGGCTCCCTTTGATGAAAATTCAATGGATGTTGTTGAAGAAACAAAGGCTTCCAAAAACCGATCCACAATGGCAACTCACCTCAACAATCCTCAGAATGAAGGAATTCATGCTAGACATGTCAGCACTGTGTCGACAGTTGATAGTGAGCTAAACGATGAATCGGGAAATCCCATTTGGAAGAATAGGCTGGAGAGTTGGAAGGACAAGAAGGATAAGAAAACCAAGAAGAAAAAATCTGAAACTAAACCCGAGAAAGAAGCTCAAGTTCCACCAGAACAACAAATGGAAGATATACAGGCCTCTGAGGCTGCTCAGCCACTTTCCATGGTTATTCCAATGCCAAGGACGAAAATAACCCCGTACCGAATTGTGATCATCATGCGACTAATTATACTCGCTCTTTTCTTTCATTATCGTATAACACATCCCGTGGATAGTGCTTTTGGTCTATGGCTTACTTCCATTATCTGTGAAATCTGGTTCGCCTTTTCTTGGGTGCTCGATCAATTCCCCAAATGGTCTCCCATTAACCGGGATGCTTTCATTGACCGGCTTTCCGCCAGGTATGAGAGAGAGGGAGAGCCGTCTGAGCTGGCAGCTGTGGATTTCTTCGTCAGCACAGTGGACCCCCTTAAGGAACCCCCCTTGATTACTTCAAATACCGTGCTGTCGATCCTTGCAGCAGATTACCCAGTTGATAAAATCTCATGTTATGTATCTGATGATGGTGCTGCTATGCTTACATTCGAGTCCCTTGTGGAAACAGCTGACTTTGCTAGAAAGTGGGTCCCGTTTTGCAAGAAGTTTTCGATCGAACCACGAGCGCCCGAGTTTTACTTCTCGCAAAAGATTGACTATTTGAAGGATAAGGTTCAACCTTCTTTTGTCAAGGAACGTCGGGCCATGAAAAGAGATTATGAAGAGTTCAAAGTGAGAATCAATGCTTTAGTAGCAAAGGCTCAAAAAACTCCGGACGAAGGATGGACAATGCAAGATGGAACAGCTTGGCCAGGAAATAATTCTCGAGATCATCCCGGGATGATTCAGGTTTTCCTCGGACATAGTGGGGCTCATGACATAGACGGAAACGAGCTTCCTCGTCTGGTCTACGTTTCTCGAGAGAAAAGACCCGGATATCAACACCACAAAAAAGCCGGTGCTGAAAATGCTCTGGTACGGGTATCTGCAATTCTGACAAATGCTCCTTACATTCTCAACCTCGATTGTGATCACTATGTCAACAACAGCAAGGCAATCCGAGAAGCAATGTGTTTCTTGATGGACCCACAAGTGGGTCCGGATGTTTGCTATGTCCAATTCCCACAGAGATTTGATGGCATTGATCGTAGTGATCGATATGCCAATCGTAACGTTGTCTTCTTCGACGTCAATATGAAAGGGCTAGATGGAATTCAAGGCCCAATGTATGTAGGGACGGGTTGTGTTTTCAACCGGCAAGCTCTTTATGGGTATGGGCCTCCTTCTATGCCGACTTTACAAAAGGTTTCCTCTTCATCTTCTTGTTCATGGTGTGGGTTCTGTTCTTGTTGCTGTCCTTCAAAGAAGCCATCTAAAGATATGACAGAGGTTTACCGAGATGCCAAAAGGGAAGAACTTGATGCTGCAATATTCAACCTTAGGGAAATTGATAATTATGATGAGCATGAGAGGTCAATGCTGATTTCTCAAATGAGTTTTGAGAAAACTTTCGGATTATCTTCCGTATTTATCGAGTCCACATTGATGGAAAATGGAGGAGTGGCTGAATTGGCAAACCCGTCTACACTGATCAAGGAAGCTATTCATGTTATTAGCTGTGGCTATGAAGAGAAGACAGCTTGGGGAAAAGAGATTGGATGGATTTATGGCTCTGTCACGGAGGATATCTTAACGGGCTTTAAGATGCACTGTAGAGGATGGAGGTCCATTTACTACATGCCCTTTAGGCCCGCCTTTAAAGGATCAGCCCCCATTAACCTTTCCGATCGGCTCCACCAAGTTCTTCGGTGGGCGCTCGGTTCGGTCGAGATTTTCCTTAGTAGACACTGTCCCTTATGGTATGGTTTTTCGGGCGGTAGACTTAAATGGCTCCAAAGACTTGCATACATAAACACAATCGTCTATCCATTCACCTCTCTTCCTCTCATTGCTTATTGCTCATTGCCCGCAATTTGCCTCCTCACTGGAAAGTTCATCATCCCAACGCTTTCGAACCTAGCAAGTATGTTGTTTCTAGGCCTCTTCATGTCCATCATTGTGAATAGTGTGCTTGAGCTAAGGTGGAGTGGTGTTAGTATCGAAGATTGGTGGAGGAATGAACAATTTTGGGTAATTGGAGGTGTTTCGGCTCATCTTTTCGCTGTTTTCCAAGGATTCTTAAAAATGTTAGCTGGTGTTGACACCAACTTCACAGTTACTGCAAAAGCGGCTGATGATTTGGAATTTGGAGACCTTTATATTGTCAAATGGACCACACTGTTGATCCCTCCTACTACCCTTCTCATTATCAATATGGTGGGTGTAGTGGCTGGGTTTTCTGATGCACTAAACAAAGGATATGAAGCATGGGGTCCGCTTTTTGGGAAGGTGTTCTTTGCCTTCTGGGTCATTTTTCATCTCTACCCGTTCTTGAAGGGTCTTATGGGCCGGCAAAACCGAACTCCAACAATTGTTGTTCTTTGGTCGGTTTTGTTGGCCTCCGTGTTTTCACTCGTTTGGGTCAAGATAAATCCATTTGTGGGCAATGACAGTGGGACTGTTGTGCAGAGCTGCATTTCTATAGATTGCTGA 2952 44.61 MEAGAPICHTCGEQVGVDANGDVFIACHECNFPICKVCFEYELKDGRKACFRCGAPFDENSMDVVEETKASKNRSTMATHLNNPQNEGIHARHVSTVSTVDSELNDESGNPIWKNRLESWKDKKDKKTKKKKSETKPEKEAQVPPEQQMEDIQASEAAQPLSMVIPMPRTKITPYRIVIIMRLIILALFFHYRITHPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPINRDAFIDRLSARYEREGEPSELAAVDFFVSTVDPLKEPPLITSNTVLSILAADYPVDKISCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEFKVRINALVAKAQKTPDEGWTMQDGTAWPGNNSRDHPGMIQVFLGHSGAHDIDGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAILTNAPYILNLDCDHYVNNSKAIREAMCFLMDPQVGPDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPMYVGTGCVFNRQALYGYGPPSMPTLQKVSSSSSCSWCGFCSCCCPSKKPSKDMTEVYRDAKREELDAAIFNLREIDNYDEHERSMLISQMSFEKTFGLSSVFIESTLMENGGVAELANPSTLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYYMPFRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFSGGRLKWLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASMLFLGLFMSIIVNSVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDLEFGDLYIVKWTTLLIPPTTLLIINMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVGNDSGTVVQSCISIDC 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4926527 4930549 + Conep06aG0098000.1 Cone6ag0945 439829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0945 983 Pfam Zinc-binding RING-finger 6 59 IPR027934 -
Cone6ag0945 983 SUPERFAMILY Nucleotide-diphospho-sugar transferases 269 787 IPR029044 -
Cone6ag0945 983 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 175 951 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone6ag0945 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 409 549 IPR029044 -
Cone6ag0945 983 Pfam Cellulose synthase 255 974 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone6ag0945 983 CDD mRING-HC-C4C4_CesA 6 56 - -
Cone6ag0945 983 MobiDBLite consensus disorder prediction 131 145 - -
Cone6ag0945 983 MobiDBLite consensus disorder prediction 123 153 - -
Cone6ag0945 983 FunFam Cellulose synthase 372 546 - -
Cone6ag0945 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
Cone6ag0945 983 SUPERFAMILY RING/U-box 3 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0945 Cone-Chr6:4926527 Cone7ag0557 Cone-Chr7:2678513 0 dispersed
Cone6ag0945 Cone-Chr6:4926527 Cone18ag0800 Cone-Chr18:4711339 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0945 K10999 - vvi:100261696 1732.23