Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0951 ATGGCGGATCCGAATAGAAAAGCCCATAATACCACCAACAGCAAGAAAGAGAAAGACACTCCATTCCTTCTTCTCGGCCGCTACGAGATCGGAAAACTCCTCGGTCATGGAACCTTTGCGAAAGTCTACCACGCGCGAAACATCAAAACCAACGAAGGTGTGGCGATCAAAGTGATCGACAAAGAGAAGATTCTAAAGAGCGGCTTAATCGCTCACATCAAGCGCGAGATCTCGATTCTCCGCCGTGTCCGCCACCCTAACATCGTCCAGCTCTTCGAAGTCATGGCAACGAAATCGAAGATCTACTTCATCATGGAGTACGTACGTGGCGGCGAGCTCTTCAACAAAGTCGCTAAAGGCAGATTGAAAGAAGAAGCGGCACGGAAATACTTCCAGCAGTTAATCTCCGCCGTCGGATTTTGCCACGCGCGCGGAGTCTACCACCGTGACCTGAAACCTGAAAACCTATTGCTCGACGAAAACGGCGATCTCAAAGTCTCCGATTTCGGACTCAGTGCCGTCTCTGATCAAATACGGCAGGACGGTCTTTTCCACACATTTTGTGGAACCCCTGCTTACGTGGCACCGGAAGTTCTTGCTCGGAAAGGTTATGAAGCCGGTAAGGTAGATATCTGGTCTTGTGGAGTAGTTTTATTTGTTCTAATGGCTGGTTATTTACCTTTCCAAGATCAAAATATCATGATTATGTATAAGAAAATCTACAAGGGTGACTTTAGGTGTCCTAAATGGTTCTCACCGGAGCTAGTCCGGCTTCTAATCCGCCTCCTTGATACGAATCCGGAAACACGAATAACAATCCCTGAAATCATGGAGACCAAATGGTTCAAAAAAGGGTATAAACATATCAAGTTTTACATTGAAGATGATAGGCTTTGTAATGTTGAAGATACTGGTAACGCTAATGGTAATGGTAATGTTAACGGTAACTGTAACGATAGTGATTTGGATTCCTTACCGGATTCTGAACCAGAAGTTGAGGTTAGGAGTAGGAGAGTGGGGTCGCTGCCTAGACCGGCTAGTTTGAATGCGTTTGACATTATATCGTTTTCACCCGGTTTTGATCTCTCTGGTTTGTTTGAAGAAGGTGGGGAAGAGTCTAGGTTTGTTTCGGGCGCTCCGGTTACTAAGATTATATCGAAATTGGAGGAGATTGCTCAGTTGGTGAGTTTTACGGTCAGGAAGAAGGACTGTAGGGTGAGCTTGGAGGGCTCAAGGGAAGGAGTGAAGGGTCCTTTATCGATTGCAGCTGAGATATTTGAATTGACTCCGTCTTTAGTTGTGGTGGAGGTAAAGAAGAAAGGAGGAGATAAAATGGAGTATGAACAGTTCTGTAGCAAGGAATTGCGGCCAGGTTTGCAGAATTTGGCCATAGAAGAAGCTGCTTCTTCTGTTTCTTCTTCTTCTCGCGAGTATGTAGTACCTTCAGATACTGAATGA 1458 45.54 MADPNRKAHNTTNSKKEKDTPFLLLGRYEIGKLLGHGTFAKVYHARNIKTNEGVAIKVIDKEKILKSGLIAHIKREISILRRVRHPNIVQLFEVMATKSKIYFIMEYVRGGELFNKVAKGRLKEEAARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAGKVDIWSCGVVLFVLMAGYLPFQDQNIMIMYKKIYKGDFRCPKWFSPELVRLLIRLLDTNPETRITIPEIMETKWFKKGYKHIKFYIEDDRLCNVEDTGNANGNGNVNGNCNDSDLDSLPDSEPEVEVRSRRVGSLPRPASLNAFDIISFSPGFDLSGLFEEGGEESRFVSGAPVTKIISKLEEIAQLVSFTVRKKDCRVSLEGSREGVKGPLSIAAEIFELTPSLVVVEVKKKGGDKMEYEQFCSKELRPGLQNLAIEEAASSVSSSSREYVVPSDTE 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4980591 4982419 + Conep06aG0098600.1 Cone6ag0951 439835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0951 485 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 459 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone6ag0951 485 Gene3D Transferase(Phosphotransferase) domain 1 20 323 - -
Cone6ag0951 485 FunFam Non-specific serine/threonine protein kinase 20 107 - -
Cone6ag0951 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0951 485 Pfam NAF domain 345 401 IPR004041 GO:0007165(InterPro)
Cone6ag0951 485 FunFam Non-specific serine/threonine protein kinase 16 320 - -
Cone6ag0951 485 ProSiteProfiles NAF domain profile. 343 367 IPR018451 GO:0007165(InterPro)
Cone6ag0951 485 CDD CIPK_C 349 460 - -
Cone6ag0951 485 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524(InterPro)
Cone6ag0951 485 Gene3D Kinase associated domain 1, KA1 343 464 - -
Cone6ag0951 485 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0951 485 FunFam Non-specific serine/threonine protein kinase 345 463 - -
Cone6ag0951 485 SUPERFAMILY Protein kinase-like (PK-like) 24 290 IPR011009 -
Cone6ag0951 485 SMART serkin_6 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0951 485 CDD STKc_SnRK3 27 281 - -
Cone6ag0951 485 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0951 Cone-Chr6:4980591 Cone7ag0077 Cone-Chr7:332438 6.52E-170 dispersed
Cone1ag0212 Cone-Chr1:1285445 Cone6ag0951 Cone-Chr6:4980591 7.25E-271 wgd
Cone5ag1652 Cone-Chr5:11710174 Cone6ag0951 Cone-Chr6:4980591 1.21E-271 wgd
Cone6ag0951 Cone-Chr6:4980591 Cone7ag0496 Cone-Chr7:2280931 1.73E-76 wgd
Cone6ag0951 Cone-Chr6:4980591 Cone9ag0959 Cone-Chr9:4798124 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82938 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0951 - - - 0.0