Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0960 ATGGACAGCCAAGATGAGCAAGATCATATTAAGCTATTTGGTAAGACGATAACGCTGCGAAATAGGCAACTAAAAGACGAAGCTAAAACAGCTGATCATCAAGAAACGGTGGATAAGAGACCAGAAAAGATTATTCCTTGTCCGAGATGCAAGAGCATGGAGACCAAGTTTTGTTACTTCAATAACTATAACGTTAACCAGCCAAGACATTTTTGTAAGGGCTGTCAGAGGTATTGGACTGCAGGTGGAGCCCTCCGGAACGTGCCGGTTGGGGCTGGCCGCCGGAAAACCAAACCACCTTGTTGTGGCCTTTCCGGATTGTCCAAGAGTTGCCTCATTGATGCATCTGGGATGGTTCACAAGTTTGAGTTAGACGGGATGGTGGAGGATCAGTGGCATGTTATGGCGGCAGATGGCAGTTTCCAGCAAGTCTTGCCGGCAAAGAGGCGGAGGAACATCGAACAAGCAGGTCAAACTTACTGA 483 47.62 MDSQDEQDHIKLFGKTITLRNRQLKDEAKTADHQETVDKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCCGLSGLSKSCLIDASGMVHKFELDGMVEDQWHVMAADGSFQQVLPAKRRRNIEQAGQTY 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5082903 5083385 + Conep06aG0099500.1 Cone6ag0960 439844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0960 160 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone6ag0960 160 Pfam Dof domain, zinc finger 43 98 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone6ag0960 160 PANTHER CYCLIC DOF FACTOR 2 26 105 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Cone6ag0960 160 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0536 Cone-Chr4:2408226 Cone6ag0960 Cone-Chr6:5082903 6.62E-32 dispersed
Cone6ag0960 Cone-Chr6:5082903 Cone9ag1003 Cone-Chr9:5214089 1.71E-26 dispersed
Cone6ag0960 Cone-Chr6:5082903 Cone7ag0510 Cone-Chr7:2346198 5.44E-35 wgd
Cone6ag0960 Cone-Chr6:5082903 Cone9ag0968 Cone-Chr9:4874414 6.65E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46347 PF03791 KNOX2 1.70E-17 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0960 - - - 0.0