Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag0985 | ATGGGTGCTTTAATCGATCTGAATACGACTGAGGAGGAAGAAACGCCGTCGTCTGGTGGTTCCTCTGCTTCTTCCTTCTCCTCCTCTGTTTCTGCCTCTGCTTACAATTATTCTCCATCCTCTTCTTCGACCTCTGTTTGCTTGGAGCTATGGCACGCTTCTGCGGGCCCACTTATCTCTTTGCCGAAGAAAGGGAGTATTGTAGTGTATTTGCCTCAAGGCCACTTTGAGAAGGATCAAGATCTTCCCCCTTCAGCTTATGATCTTCCCCCTCAGCTCCTCTGTCGAGTTGTGGATGTGCACCTCCATGCAGAGGTGGGTACTGATGAGGTTTATGCTCAGGTGTCACTGCTTCCTGAAACTGAGCAAAATGCTCACAAATTGCTTGAAGGAGAGGTGGCTATGGAAAGTGAAGAGGAAGACCTTGAAGCCGTAGGAAAGTCCACAACACCACACATGTTCTGTAAAACCCTTACGGCTTCTGATACAAGTACTCACGGTGGTTTCTCTGTTCCTCGTCGAGCTGCTGAGGACTGCTTTCCACCCTTGGACTATAATCAACAAAGACCTTTTCAAGAGCTTGTAGCTAAGGATTTGCATGGGTTAGAATGGAAGTTCCGACATATCTACAGGGGGCAGCCAAGAAGGCATTTGCTGACGACTGGATGGAGTGCATTTGTGAACAAGAAGAAGCTTGTATCTGGAGATGCTGTTCTTTTCCTTAGGGCTGAAGATGGAGGGCTAAGACTGGGGATCCGAAGAGCTACTCATGTTAAAAGTGGGTCCACATTTCCCGGTTTATCGGGCCAGCAATCAAGCTCTAGTTCTCACATGGATGTTATTAATGCTATCTCTAGGAAAACTGCCTTTAGTGTCTACTATGATCCAAGGGCCGGCTCTTCTGAGTTCATTGTACCTTTGGGCAAATTCTTGAAGAGCATTAATCATCCTTTTTCTGTTGGGATGAGGTTCAAGATGTGTTTTGAAACAGAAGATGCTGCTGAGAGAAGATACACAGGACTAATTACTGGAATCAGCGATTTGGATTCTTTAAGATGGCCTGGTTCGAAGTGGAAATGTGTCATGGTTAGGTGGGATTCTATAGAGACAAATAAGCATGGAAGGGTTTCACCATGGGAGATCGAGCCCTCTGGTTCAGCCTCCAGTCCCCACAGCTTAGCACCCGGTTTGAAGAGAACCCGGACTTCACTTTCTTTCTCGAAGCCTGAGATTCCAGTTCCTAATGGGATTGGAGCTTTAGACTTTGGGGAATCTTCAAGATTCCATAAGGTCTTGCAAGGTCAAGAAATTTTTGATTCCGATACTTCTACAAGGTATCATCAATATCCACCCAAAAAAGGCAGCAGGTCTTTTACGGGTCTTTTGGGAAATGGTGTAAGAAACCAGCTCTTAAACTCTACCACCACTTCCTCCAAAGGCATTGGCTTTGGCGAATCTTTAAGGTTCCATAAGGTCTTGCAAGGTCAAGAAATATTCTCCGTCCCTCCCATTGGACGCCCTGGTCCTTCTACCGGACCGGCCCGACCCGAGTGGCACCATTTCATTTCAGGCAGCTCAAATTCACATGGATGGCCCTCAGGCCCACCGGGACAACTATCTTCACCCTCCTCCGTGTTAATGTTCCAACAAGCAAATGGTCCGGTTCCAAGCTTTGGTTCGTACTATAGTGGTAATAGTAATATTAATCCAGATGAATCGAAAATCGTCAGAAGATCTCCCTACATGTCTGAGACTGATTTGAATGGTTGTGATGTGAATAAGGGGACTCTTCCAAAGGGAGGTATGACAGGTTTTCTTTTGTCGAATAATAAGAGCAATCATCAATCTGGTATTTCAGGCAATGAGTTAGTTTCTTCGTGCAAAATGAGCTGTAGACTTTTTGGTTTCTCCTTGACTGAGGAGAAGAATGTTGTGAATGAGGACAAACCGAGCTCCGTCCCATCTCCTATGAAGCCTGTTGATTCTTCTTTCTTGTCAAATGTTGGTGGGCAGTTTCATTCAAGGCCACCATTGATGATGAACAAGGCACTTGGAAGCAACTGTACCAAAGGAGCTTTTCAGTACTGTGTTGCTAATTCTAGTGTTTACTATTGA | 2115 | 45.53 | MGALIDLNTTEEEETPSSGGSSASSFSSSVSASAYNYSPSSSSTSVCLELWHASAGPLISLPKKGSIVVYLPQGHFEKDQDLPPSAYDLPPQLLCRVVDVHLHAEVGTDEVYAQVSLLPETEQNAHKLLEGEVAMESEEEDLEAVGKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPFQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRAEDGGLRLGIRRATHVKSGSTFPGLSGQQSSSSSHMDVINAISRKTAFSVYYDPRAGSSEFIVPLGKFLKSINHPFSVGMRFKMCFETEDAAERRYTGLITGISDLDSLRWPGSKWKCVMVRWDSIETNKHGRVSPWEIEPSGSASSPHSLAPGLKRTRTSLSFSKPEIPVPNGIGALDFGESSRFHKVLQGQEIFDSDTSTRYHQYPPKKGSRSFTGLLGNGVRNQLLNSTTTSSKGIGFGESLRFHKVLQGQEIFSVPPIGRPGPSTGPARPEWHHFISGSSNSHGWPSGPPGQLSSPSSVLMFQQANGPVPSFGSYYSGNSNINPDESKIVRRSPYMSETDLNGCDVNKGTLPKGGMTGFLLSNNKSNHQSGISGNELVSSCKMSCRLFGFSLTEEKNVVNEDKPSSVPSPMKPVDSSFLSNVGGQFHSRPPLMMNKALGSNCTKGAFQYCVANSSVYY | 704 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5395159 | 5399820 | + | Conep06aG0102400.1 | Cone6ag0985 | 439869 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag0985 | 704 | MobiDBLite | consensus disorder prediction | 10 | 28 | - | - | |
Cone6ag0985 | 704 | SUPERFAMILY | DNA-binding pseudobarrel domain | 148 | 261 | IPR015300 | - | |
Cone6ag0985 | 704 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 45 | 666 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cone6ag0985 | 704 | FunFam | Auxin response factor | 152 | 256 | - | - | |
Cone6ag0985 | 704 | Gene3D | - | 317 | 390 | - | - | |
Cone6ag0985 | 704 | Gene3D | - | 152 | 256 | IPR015300 | - | |
Cone6ag0985 | 704 | CDD | B3_DNA | 152 | 254 | IPR003340 | GO:0003677(InterPro) | |
Cone6ag0985 | 704 | MobiDBLite | consensus disorder prediction | 521 | 543 | - | - | |
Cone6ag0985 | 704 | FunFam | Auxin response factor | 317 | 388 | - | - | |
Cone6ag0985 | 704 | Pfam | B3 DNA binding domain | 154 | 255 | IPR003340 | GO:0003677(InterPro) | |
Cone6ag0985 | 704 | SMART | B3_2 | 154 | 256 | IPR003340 | GO:0003677(InterPro) | |
Cone6ag0985 | 704 | MobiDBLite | consensus disorder prediction | 500 | 543 | - | - | |
Cone6ag0985 | 704 | ProSiteProfiles | B3 DNA-binding domain profile. | 154 | 256 | IPR003340 | GO:0003677(InterPro) | |
Cone6ag0985 | 704 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cone6ag0985 | 704 | Pfam | Auxin response factor | 281 | 361 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag1237 | Cone-Chr5:5735524 | Cone6ag0985 | Cone-Chr6:5395159 | 1.54E-72 | dispersed | |
Cone6ag0985 | Cone-Chr6:5395159 | Cone7ag0007 | Cone-Chr7:41810 | 4.75E-103 | dispersed | |
Cone6ag0985 | Cone-Chr6:5395159 | Cone9ag0989 | Cone-Chr9:5080316 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46351 | PF01694 | Rhomboid | 2.30E-41 | CL0207 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag0985 | K14486 | - | csv:101220018 | 760.755 |