Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0985 ATGGGTGCTTTAATCGATCTGAATACGACTGAGGAGGAAGAAACGCCGTCGTCTGGTGGTTCCTCTGCTTCTTCCTTCTCCTCCTCTGTTTCTGCCTCTGCTTACAATTATTCTCCATCCTCTTCTTCGACCTCTGTTTGCTTGGAGCTATGGCACGCTTCTGCGGGCCCACTTATCTCTTTGCCGAAGAAAGGGAGTATTGTAGTGTATTTGCCTCAAGGCCACTTTGAGAAGGATCAAGATCTTCCCCCTTCAGCTTATGATCTTCCCCCTCAGCTCCTCTGTCGAGTTGTGGATGTGCACCTCCATGCAGAGGTGGGTACTGATGAGGTTTATGCTCAGGTGTCACTGCTTCCTGAAACTGAGCAAAATGCTCACAAATTGCTTGAAGGAGAGGTGGCTATGGAAAGTGAAGAGGAAGACCTTGAAGCCGTAGGAAAGTCCACAACACCACACATGTTCTGTAAAACCCTTACGGCTTCTGATACAAGTACTCACGGTGGTTTCTCTGTTCCTCGTCGAGCTGCTGAGGACTGCTTTCCACCCTTGGACTATAATCAACAAAGACCTTTTCAAGAGCTTGTAGCTAAGGATTTGCATGGGTTAGAATGGAAGTTCCGACATATCTACAGGGGGCAGCCAAGAAGGCATTTGCTGACGACTGGATGGAGTGCATTTGTGAACAAGAAGAAGCTTGTATCTGGAGATGCTGTTCTTTTCCTTAGGGCTGAAGATGGAGGGCTAAGACTGGGGATCCGAAGAGCTACTCATGTTAAAAGTGGGTCCACATTTCCCGGTTTATCGGGCCAGCAATCAAGCTCTAGTTCTCACATGGATGTTATTAATGCTATCTCTAGGAAAACTGCCTTTAGTGTCTACTATGATCCAAGGGCCGGCTCTTCTGAGTTCATTGTACCTTTGGGCAAATTCTTGAAGAGCATTAATCATCCTTTTTCTGTTGGGATGAGGTTCAAGATGTGTTTTGAAACAGAAGATGCTGCTGAGAGAAGATACACAGGACTAATTACTGGAATCAGCGATTTGGATTCTTTAAGATGGCCTGGTTCGAAGTGGAAATGTGTCATGGTTAGGTGGGATTCTATAGAGACAAATAAGCATGGAAGGGTTTCACCATGGGAGATCGAGCCCTCTGGTTCAGCCTCCAGTCCCCACAGCTTAGCACCCGGTTTGAAGAGAACCCGGACTTCACTTTCTTTCTCGAAGCCTGAGATTCCAGTTCCTAATGGGATTGGAGCTTTAGACTTTGGGGAATCTTCAAGATTCCATAAGGTCTTGCAAGGTCAAGAAATTTTTGATTCCGATACTTCTACAAGGTATCATCAATATCCACCCAAAAAAGGCAGCAGGTCTTTTACGGGTCTTTTGGGAAATGGTGTAAGAAACCAGCTCTTAAACTCTACCACCACTTCCTCCAAAGGCATTGGCTTTGGCGAATCTTTAAGGTTCCATAAGGTCTTGCAAGGTCAAGAAATATTCTCCGTCCCTCCCATTGGACGCCCTGGTCCTTCTACCGGACCGGCCCGACCCGAGTGGCACCATTTCATTTCAGGCAGCTCAAATTCACATGGATGGCCCTCAGGCCCACCGGGACAACTATCTTCACCCTCCTCCGTGTTAATGTTCCAACAAGCAAATGGTCCGGTTCCAAGCTTTGGTTCGTACTATAGTGGTAATAGTAATATTAATCCAGATGAATCGAAAATCGTCAGAAGATCTCCCTACATGTCTGAGACTGATTTGAATGGTTGTGATGTGAATAAGGGGACTCTTCCAAAGGGAGGTATGACAGGTTTTCTTTTGTCGAATAATAAGAGCAATCATCAATCTGGTATTTCAGGCAATGAGTTAGTTTCTTCGTGCAAAATGAGCTGTAGACTTTTTGGTTTCTCCTTGACTGAGGAGAAGAATGTTGTGAATGAGGACAAACCGAGCTCCGTCCCATCTCCTATGAAGCCTGTTGATTCTTCTTTCTTGTCAAATGTTGGTGGGCAGTTTCATTCAAGGCCACCATTGATGATGAACAAGGCACTTGGAAGCAACTGTACCAAAGGAGCTTTTCAGTACTGTGTTGCTAATTCTAGTGTTTACTATTGA 2115 45.53 MGALIDLNTTEEEETPSSGGSSASSFSSSVSASAYNYSPSSSSTSVCLELWHASAGPLISLPKKGSIVVYLPQGHFEKDQDLPPSAYDLPPQLLCRVVDVHLHAEVGTDEVYAQVSLLPETEQNAHKLLEGEVAMESEEEDLEAVGKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPFQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRAEDGGLRLGIRRATHVKSGSTFPGLSGQQSSSSSHMDVINAISRKTAFSVYYDPRAGSSEFIVPLGKFLKSINHPFSVGMRFKMCFETEDAAERRYTGLITGISDLDSLRWPGSKWKCVMVRWDSIETNKHGRVSPWEIEPSGSASSPHSLAPGLKRTRTSLSFSKPEIPVPNGIGALDFGESSRFHKVLQGQEIFDSDTSTRYHQYPPKKGSRSFTGLLGNGVRNQLLNSTTTSSKGIGFGESLRFHKVLQGQEIFSVPPIGRPGPSTGPARPEWHHFISGSSNSHGWPSGPPGQLSSPSSVLMFQQANGPVPSFGSYYSGNSNINPDESKIVRRSPYMSETDLNGCDVNKGTLPKGGMTGFLLSNNKSNHQSGISGNELVSSCKMSCRLFGFSLTEEKNVVNEDKPSSVPSPMKPVDSSFLSNVGGQFHSRPPLMMNKALGSNCTKGAFQYCVANSSVYY 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5395159 5399820 + Conep06aG0102400.1 Cone6ag0985 439869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0985 704 MobiDBLite consensus disorder prediction 10 28 - -
Cone6ag0985 704 SUPERFAMILY DNA-binding pseudobarrel domain 148 261 IPR015300 -
Cone6ag0985 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 666 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone6ag0985 704 FunFam Auxin response factor 152 256 - -
Cone6ag0985 704 Gene3D - 317 390 - -
Cone6ag0985 704 Gene3D - 152 256 IPR015300 -
Cone6ag0985 704 CDD B3_DNA 152 254 IPR003340 GO:0003677(InterPro)
Cone6ag0985 704 MobiDBLite consensus disorder prediction 521 543 - -
Cone6ag0985 704 FunFam Auxin response factor 317 388 - -
Cone6ag0985 704 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677(InterPro)
Cone6ag0985 704 SMART B3_2 154 256 IPR003340 GO:0003677(InterPro)
Cone6ag0985 704 MobiDBLite consensus disorder prediction 500 543 - -
Cone6ag0985 704 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677(InterPro)
Cone6ag0985 704 MobiDBLite consensus disorder prediction 1 28 - -
Cone6ag0985 704 Pfam Auxin response factor 281 361 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1237 Cone-Chr5:5735524 Cone6ag0985 Cone-Chr6:5395159 1.54E-72 dispersed
Cone6ag0985 Cone-Chr6:5395159 Cone7ag0007 Cone-Chr7:41810 4.75E-103 dispersed
Cone6ag0985 Cone-Chr6:5395159 Cone9ag0989 Cone-Chr9:5080316 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46351 PF01694 Rhomboid 2.30E-41 CL0207 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0985 K14486 - csv:101220018 760.755