Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0989 ATGCATCCTAACATCTTCTTCGCCTGTTCATTCTTCTTCTTCGTTCTGTTTAACAATTCGCTTCTCTCCCTCTCTCTGAATCAAGAAGCTCTCTACCTCCAAACAGTAAAGCTCTCCCTCGACGACCCAGACTCCGTCCTCACCTCGTGGACCAACAGCGACCACCGTGATGACGTCACGCCCTGCGCCTGGTTCGGTGTCCAGTGCGACTCTGCAACTCGCTTCGTCGTCTCACTCGACCTCTCTAGCTCAAACCTCGCCGGACCTTTCCCTTCTCTCCTCTGCCGTCTACATAACCTCACTTCCATCTCTCTCTATAATAACTCCATCAACTCCATTCTACCGTTGGATCTCTCCGATTGTCAGAATCTCCACCACCTCGATCTCGGGCAGAACCTCCTCACCGGTACCCTCCCTAGCACTCTCTCCGACCTCCCTAATCTCCGTTACTTGGACCTAAGCGGGAACAATTTCTCGGGCGATATACCGCCAAGTTTTGGCGAGTTTCAAAATCTCGAGGTTCTCTCGCTCATCTCGAATCTTCTCGACGGTCCGTTACCAGCATTTCTTGGCAACGTCACGACGCTCAAAATGCTCAACATTTCGTACAACCCGTATCTCCCGGGTCGGATCCCACCCGAATTCGGTAACTTGACCAACCTTGAGGTGTTGTGGCTCACTCAATGCAACTTAATCGGAGAGATTCCTGACTCGCTGAGTCGACTCAAGAGACTCACCGATCTAGACCTCTCGCTCAACAGCCTCCAGGGTTCGATTCCCAGTTCACTCACTGAGTTAACCAGTGTGGTTCAGATCGAGCTGTATAACAACTCGCTCACCGGCGAATTGCCGGCTGGATTTTCGAACATGACTTCATTGAGACGACTTGATGCGTCCATGAACAAGTTGGTGGGACCGATTCCTGACGAGTTGTGTCAGTTACCACTGGAGAGTCTAAACCTGTACGAGAATCAGATGGAAGGAGAGTTGCCGGAGAGCATTTCGAGCTCGCCGGCATTGTACGAGCTCAGGCTGTTCGGAAACAGATTCTCCGGTAAGTTGCCGAAAAATCTCGGGAAAAATTCTCGTCTGAAATGGATTGATATTACAGATAATCAGTTCTCAGGTGAGATTCCGGCCACTTTGTGTGAAAACGGGGAGTTAGAAGAGCTTCTGATTCTAAACAACAGGCTTTCCGGGAAGCTTCCGAAGAATTTAGGCGAGTGCTGGAGTTTGAGCCGTGTCAGATTAAGTCGCAATCATTTTTCCGGTGAAGTCCCGGCAGAATTATGGGGACTTGCAAATGTATATCTTCTAGAACTTGTTGACAACTTCTTTTCCGGTCAAATCGAGAAGACGATTGCCAGTGCGAAGAGTCTCTCGGTCCTCAAAATTTCGGGGAATAACTTTACTGGAGTGATACCAGAGGAGATAGGAAGTTTGGAAAATCTTATAGAATTGTCAGGGAGTGATAACAAGCTAAGTGGGTCTTTACCTATAAGTATTGTTAATCTTCATAAGCTTTCAAGCTTAAATCTTCAAAATAATGAGCTCTCAGGCAAGATTCCAAGCGGTATCAAATCCTTGAAGAATCTGAACGAGCTCAATCTGGCTAATAATGAGTTCTTTGGCGAAATTCCTAATGAAATTGGGAGCATGCCTGTGCTTAATTACCTTGATCTTTCTAGTAATCAGTTTTCCGGGAAAATCCCGTATGATTTACAGGACTTGAAGTTAAACCTGCTCAACTTGTCGAACAATCTTCTCTCAGGCGAGCTTCCGCCATTATTTTCGAAAGAAATGTATAGAAATAGCTTTCTGGGCAATCCTGGTTGTTGTGGAATCGTAGGCAGTTTATGTGATCGCGAGACTAGAACTAGAAACCGAAGCTATGAATGGTTGTTCCGGTCCATATTCATGCTTGCAGTTCTAGTTTTTGTCATAGGCGTCATTTGGTTTTCATTGAAGTACAAGAAATTAAAAAACGCAAAGCGAGCAGTGGATAAATCGAAATGGACATTAATGTCATTCCACAAATTGGGTTTTTGTGAAAAAGAGATCTTAGATTGTCTTGACGAGGATAATGTGATTGGCAGTGGATCTTCCGGAAAGGTTTACAAAGCTGTGCTAACTAATGGTGAAGCCGTTGCAGTAAAGAAGCTTTGGACCAATACAAAAAAGGAGAGTGAAAATGGTGTTATTGAGAAAGTTCAAGTTCAATTTAGAGACAATGGGTTTGAAGCAGAGGTTGAGACTTTAGGGAAAATTAGGCACAAGAACATAGTTAAATTATGGTGTTGTTGCTCGACTAGAGATTGTAAGCTTTTGGTTTATGAGTACATGCCTTATGGAAGCTTGGGCGATTTGCTTCATAGTAGTAAAGCCGGGTTACTGGATTGGCCCATTAGGTATAAGATTGCTTTGGATTCGGCTGAAGGGCTCTCTTATCTCCATCATGATTGTGTTCCGGCTATAGTTCATAGAGATGTCAAATCCAACAACATCTTGTTGGATGGAGATTTCGGAGCAAGAGTGGCCGATTTTGGATTGGCTAAGGAAGTTGATTCTTCCGGTAAAGGGCCTAAATCGATGTCTGTTATTGCTGGTTCTTGCGGGTACATAGCCCCAGAATATGCTTATACATTAAGGGTCAATGAGAAGAGTGACATATACAGTTTCGGCGTGGTGATCCTTGAATTGGTGACGGGGAGGCTTCCGGTCGACCTGGAATTTGGGGAAAAGGATCTGGTGAAATGGGTTTGTACCACATTGGATCAAAAGGGTTTAGATCATGTGCTAGACCCTAAGCTTGATATATGTTACAAGGAAGAAATATGCAAAGTACTCAATATCGGGATTGTTTGCACGAGCCCGCTTCCCATCAATCGCCCGTCCATGAGAAGGGTAGTTAAAATGTTGCAAGAAGTGAGTGCGGAGAATCAGTTGAGTAATTCTAAGAAAGATGGGAAACTAACTCCGTACTTTTACGAGGATGCTCCGGATCAAGGGAGGATGCATCGAGTTCTCTTTAATTGA 3036 44.93 MHPNIFFACSFFFFVLFNNSLLSLSLNQEALYLQTVKLSLDDPDSVLTSWTNSDHRDDVTPCAWFGVQCDSATRFVVSLDLSSSNLAGPFPSLLCRLHNLTSISLYNNSINSILPLDLSDCQNLHHLDLGQNLLTGTLPSTLSDLPNLRYLDLSGNNFSGDIPPSFGEFQNLEVLSLISNLLDGPLPAFLGNVTTLKMLNISYNPYLPGRIPPEFGNLTNLEVLWLTQCNLIGEIPDSLSRLKRLTDLDLSLNSLQGSIPSSLTELTSVVQIELYNNSLTGELPAGFSNMTSLRRLDASMNKLVGPIPDELCQLPLESLNLYENQMEGELPESISSSPALYELRLFGNRFSGKLPKNLGKNSRLKWIDITDNQFSGEIPATLCENGELEELLILNNRLSGKLPKNLGECWSLSRVRLSRNHFSGEVPAELWGLANVYLLELVDNFFSGQIEKTIASAKSLSVLKISGNNFTGVIPEEIGSLENLIELSGSDNKLSGSLPISIVNLHKLSSLNLQNNELSGKIPSGIKSLKNLNELNLANNEFFGEIPNEIGSMPVLNYLDLSSNQFSGKIPYDLQDLKLNLLNLSNNLLSGELPPLFSKEMYRNSFLGNPGCCGIVGSLCDRETRTRNRSYEWLFRSIFMLAVLVFVIGVIWFSLKYKKLKNAKRAVDKSKWTLMSFHKLGFCEKEILDCLDEDNVIGSGSSGKVYKAVLTNGEAVAVKKLWTNTKKESENGVIEKVQVQFRDNGFEAEVETLGKIRHKNIVKLWCCCSTRDCKLLVYEYMPYGSLGDLLHSSKAGLLDWPIRYKIALDSAEGLSYLHHDCVPAIVHRDVKSNNILLDGDFGARVADFGLAKEVDSSGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPVDLEFGEKDLVKWVCTTLDQKGLDHVLDPKLDICYKEEICKVLNIGIVCTSPLPINRPSMRRVVKMLQEVSAENQLSNSKKDGKLTPYFYEDAPDQGRMHRVLFN 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5425703 5429584 - Conep06aG0102800.1 Cone6ag0989 439873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0989 1011 FunFam Receptor-like protein kinase 5 210 316 - -
Cone6ag0989 1011 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 Pfam Protein kinase domain 694 914 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0989 1011 FunFam Receptor-like protein kinase HSL1 317 622 - -
Cone6ag0989 1011 Gene3D Ribonuclease Inhibitor 317 623 IPR032675 -
Cone6ag0989 1011 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 26 193 - -
Cone6ag0989 1011 Pfam Leucine rich repeat N-terminal domain 26 70 IPR013210 -
Cone6ag0989 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 781 990 - -
Cone6ag0989 1011 Gene3D Transferase(Phosphotransferase) domain 1 781 998 - -
Cone6ag0989 1011 Gene3D Ribonuclease Inhibitor 25 206 IPR032675 -
Cone6ag0989 1011 SUPERFAMILY RNI-like 78 399 - -
Cone6ag0989 1011 SUPERFAMILY L domain-like 316 603 - -
Cone6ag0989 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0989 1011 SMART LRR_sd22_2 121 147 - -
Cone6ag0989 1011 SMART LRR_sd22_2 97 118 - -
Cone6ag0989 1011 SMART LRR_sd22_2 242 268 - -
Cone6ag0989 1011 SMART LRR_sd22_2 505 534 - -
Cone6ag0989 1011 SMART LRR_sd22_2 218 241 - -
Cone6ag0989 1011 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 977 IPR050647 -
Cone6ag0989 1011 ProSiteProfiles Leucine-rich repeat profile. 99 120 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524(InterPro)
Cone6ag0989 1011 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 Pfam Leucine Rich Repeat 507 529 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 Pfam Leucine Rich Repeat 579 598 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 Pfam Leucine Rich Repeat 363 383 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 Pfam Leucine Rich Repeat 556 577 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 Pfam Leucine Rich Repeat 531 553 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
Cone6ag0989 1011 SUPERFAMILY Protein kinase-like (PK-like) 683 973 IPR011009 -
Cone6ag0989 1011 SMART LRR_typ_2 290 314 IPR003591 -
Cone6ag0989 1011 SMART LRR_typ_2 529 553 IPR003591 -
Cone6ag0989 1011 SMART LRR_typ_2 97 120 IPR003591 -
Cone6ag0989 1011 SMART LRR_typ_2 218 242 IPR003591 -
Cone6ag0989 1011 SMART LRR_typ_2 505 528 IPR003591 -
Cone6ag0989 1011 SMART LRR_typ_2 145 169 IPR003591 -
Cone6ag0989 1011 ProSiteProfiles Protein kinase domain profile. 691 995 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0989 1011 Gene3D Phosphorylase Kinase; domain 1 674 780 - -
Cone6ag0989 1011 FunFam Receptor-like protein kinase HSL1 674 780 - -
Cone6ag0989 1011 Gene3D Ribonuclease Inhibitor 207 316 IPR032675 -
Cone6ag0989 1011 SMART serkin_6 691 995 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0193 Cone-Chr12:979107 Cone6ag0989 Cone-Chr6:5425703 2.03E-91 dispersed
Cone4ag0962 Cone-Chr4:8225421 Cone6ag0989 Cone-Chr6:5425703 2.23E-76 dispersed
Cone6ag0989 Cone-Chr6:5425703 Cone9ag1418 Cone-Chr9:10516382 1.27E-97 dispersed
Cone6ag0989 Cone-Chr6:5425703 Cone9ag0992 Cone-Chr9:5100982 2.01E-301 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82940 PF00314 Thaumatin 1.70E-54 CL0293 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0989 - - - 0.0