Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1010 ATGGATCAGGCAGAGGCTAACTCTTGGCTTAGGAGAACTAAATTTTCCCACACAGTTTATCACCGTTGGGATGCTTCTAGGTTGCCTTCCAATACTTTTATGATCGAGCCGTTTATCTTAGAGCACAATTCAGGCTTGAAATCAAGACCAAAACCTTCTTCTTCCTCTGATAAGAAACCAGCTCTTAATAACTCTACCTCTTATCAGAAATCAGCTCTTAATAACTGTCCGCTTCAGCAAAATCACACACTATACAAACAAAGGGCTTCCTCCCCTATTCCTGTTACTATAGTTCCTGATCTATTTAAGGAAGCTCGATCAAATCAGAAGCGGTTCTCAACTCCAGATCCTCAAATAAAAAGAGAAATTTTCAAAGGAATCAAAGGGAAATTGTTCAATACAGAGCCACAAGTGACTGGGGCTATCAAGTCAACATCATCACCAAATACTCGACCCCAAATTGACTTGGGTTCAATGATGAAAGTGTTTGAGAAACCGAAGAATAGGAAGGAGTCGACTTGGACTAAGTATTTTGATTATGGTGGAGGAGGGAGAGTCACTGCTTTGGAAACAAGTAGTGAATGGAATGTTGATCTTTCTAAGCTGTTTCTTGGTCTTCGGTTTGCTCATGGTGCTCATAGTAGGCTTTACCATGGAGTCTACAATGATGAACCAGTTGCTGTTAAAATTATCAGGATTCCAGATGATGACGAAAATGGAGCTATGGAGGTTCGATTGGGGAAGCAATTTTTCAGAGAGGTCACTCTTTTATCTCGGCTTCACCACCCGAATGTCATAAAGTTTGTAGCAGCACGTAGAGAACCACCAGTTTATTGTGTCATAACAGAGTATCTTTCTGGGGGTTCTTTGCGGACTTATATACGAAAGAATGAAAACATATCTCTGTCTCTTCAAAAACTGATTGCTATTGCCTTGGACATTGCACGGGGAATGGAATATATTCACTCCCAGGGTGTCATTCATAGGGACTTGAAACCTGGGAATGTTCTTGTTGATCAAGAAAACCACCTGAAAGTTGCTGATTTTGGTATTGCTTGTGAGGAGGCATATTGTGATCTGGTGGCCGGTGTTCATGGCACCTACCGTTGGATGGCACCTGAGATGATCAAACAGAAATCTTATGGCCGCAAAGTTGACGTTTATAGCTTTGGGCTTATCTTATGGGAGATGTTGGCTGGGAAAATCCCCTATGAAGATATGAATCCTATCCAAGCTGCGTTTGCCGTAATAAGTAAGAATCTTAGACCCATTATCCAGAGCGACTGTCCACCAGCATTGAGAGATCTAATCGATCAATGTTGGGCCCTTCAACCCGAAAAGAGGCCCGAGTTCTGGCAGATTGTGAAGGTGTTAGAGCAGTTCGAGTCTTCACTTGCTCGGGATGGAACATTGAGTCTCATACAGAACCTGACTTGCCAAGATCACAAGAAAGGTCTCCTCCATTGGATTCAAAAGCTTGGTTCTGCGAATTCTCATACTTCACCTAAAATTGCATGA 1518 42.23 MDQAEANSWLRRTKFSHTVYHRWDASRLPSNTFMIEPFILEHNSGLKSRPKPSSSSDKKPALNNSTSYQKSALNNCPLQQNHTLYKQRASSPIPVTIVPDLFKEARSNQKRFSTPDPQIKREIFKGIKGKLFNTEPQVTGAIKSTSSPNTRPQIDLGSMMKVFEKPKNRKESTWTKYFDYGGGGRVTALETSSEWNVDLSKLFLGLRFAHGAHSRLYHGVYNDEPVAVKIIRIPDDDENGAMEVRLGKQFFREVTLLSRLHHPNVIKFVAARREPPVYCVITEYLSGGSLRTYIRKNENISLSLQKLIAIALDIARGMEYIHSQGVIHRDLKPGNVLVDQENHLKVADFGIACEEAYCDLVAGVHGTYRWMAPEMIKQKSYGRKVDVYSFGLILWEMLAGKIPYEDMNPIQAAFAVISKNLRPIIQSDCPPALRDLIDQCWALQPEKRPEFWQIVKVLEQFESSLARDGTLSLIQNLTCQDHKKGLLHWIQKLGSANSHTSPKIA 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5633418 5636883 + Conep06aG0104900.1 Cone6ag1010 439894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1010 505 SUPERFAMILY Protein kinase-like (PK-like) 188 458 IPR011009 -
Cone6ag1010 505 MobiDBLite consensus disorder prediction 44 68 - -
Cone6ag1010 505 ProSiteProfiles Protein kinase domain profile. 202 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1010 505 SMART serkin_6 202 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1010 505 Gene3D Phosphorylase Kinase; domain 1 191 286 - -
Cone6ag1010 505 PRINTS Tyrosine kinase catalytic domain signature 320 338 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1010 505 PRINTS Tyrosine kinase catalytic domain signature 366 376 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1010 505 PRINTS Tyrosine kinase catalytic domain signature 282 295 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1010 505 PRINTS Tyrosine kinase catalytic domain signature 385 407 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1010 505 PRINTS Tyrosine kinase catalytic domain signature 429 451 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1010 505 MobiDBLite consensus disorder prediction 47 68 - -
Cone6ag1010 505 Pfam Protein tyrosine and serine/threonine kinase 209 458 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1010 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 326 338 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1010 505 CDD STKc_MAP3K-like 209 458 - -
Cone6ag1010 505 PANTHER SERINE-THREONINE PROTEIN KINASE 67 460 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone6ag1010 505 Gene3D Transferase(Phosphotransferase) domain 1 287 492 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0260 Cone-Chr4:1162492 Cone6ag1010 Cone-Chr6:5633418 6.14E-62 dispersed
Cone5ag1835 Cone-Chr5:12907493 Cone6ag1010 Cone-Chr6:5633418 1.11E-104 dispersed
Cone6ag1010 Cone-Chr6:5633418 Cone7ag1915 Cone-Chr7:12257561 5.62E-69 dispersed
Cone1ag0167 Cone-Chr1:930630 Cone6ag1010 Cone-Chr6:5633418 3.15E-230 wgd
Cone12ag1487 Cone-Chr12:10611532 Cone6ag1010 Cone-Chr6:5633418 2.29E-40 wgd
Cone5ag1705 Cone-Chr5:12117338 Cone6ag1010 Cone-Chr6:5633418 1.71E-227 wgd
Cone6ag1010 Cone-Chr6:5633418 Cone8ag1535 Cone-Chr8:11531445 8.25E-42 wgd
Cone6ag1010 Cone-Chr6:5633418 Cone9ag1008 Cone-Chr9:5263645 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82941 PF03479 PCC 3.30E-23 CL0615 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1010 - - - 0.0