Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1029 ATGAGTTGTAGCTGCTTTGGTTCCTCCTCTGTCCTTGAGAGAAAGCGGAAATCTTCTCATTCTCATGACTACATTGATGGTGATTTACTTGAAAATATTACACATTTCTCCTATGATGAGCTGAAATCGGCAACCAATAATTTTTATTCTGGCAATAAGTTAGGACGTGGAGGTTTTGGAACTGTTTACAAGGGTGTTTTAAGAAGTGGAAGAGAAGTTGCCGTGAAAAATCTTTCGGCTGAGTCGAAGCAAGGAGTGAGAGAATTTTTGACAGAGATTAAAACCATATCAAATGTTCATCATCCGAATCTTGTTGAGTTGGTTGGGTGTTGTGTTGAAGGAGCTCACCGGGTTTTGGTCTATGAATTTGTTGAAAATAATAGTCTTGACCGAGCGTTATTAGGATCAAGGAGTACGAGCATCGGATTGGATTGGAAAAAAAGGTCTACTATCTGCATTGGTGTTGCCAAGGGTCTTAAGTTCCTTCATGAAGAACTTGTTCCTCACATTGTACATAGAGACATCAAAGCAAGTAACATACTTCTTGAGAAAGACTTCAATCCAAAAATCGGCGACTTCGGATTGGCTAAACTTTTTCCAGACAACATCACTCATATCAGCACAAGAATTGCCGGAACAACTGGTTATTTGGCTCCAGAATATGCATTAGGTGGTCAACTAACCATGAAAGCTGATGTCTATAGTTTTGGAGTTCTAGTACTTGAAATAATTAGCGGAAGATGGAGTGGACGAGCATATTGTGGAGATACGCAGAAATTGCTTCTCGAATGGACATGGGAGCTATATGAAAAGGGAGCACTCTTAGATCTAGTCGATGAACAGCTACATGAGTTTCCTCAAGAAGAAGTAATTAGGTACATAAAGGTAGCCCTGTTTTGCACCCAAGCAACTGCAAGTCAGAGGCCATTGATGAGCCAGGTTTTTGAGATGTTCACAAGGAACATCAGACTCAATGAAAAGCTCCTATCTGCTCCCGGGGTTTTCCAGGATTCAGGTTCTTTAAGTAAGAAATCGATAACTGATACGAGCAGCCGTCAGATGAGCTCAGCCCCAGTTACTATTACACAAGTGATCCCTAGATGA 1104 40.94 MSCSCFGSSSVLERKRKSSHSHDYIDGDLLENITHFSYDELKSATNNFYSGNKLGRGGFGTVYKGVLRSGREVAVKNLSAESKQGVREFLTEIKTISNVHHPNLVELVGCCVEGAHRVLVYEFVENNSLDRALLGSRSTSIGLDWKKRSTICIGVAKGLKFLHEELVPHIVHRDIKASNILLEKDFNPKIGDFGLAKLFPDNITHISTRIAGTTGYLAPEYALGGQLTMKADVYSFGVLVLEIISGRWSGRAYCGDTQKLLLEWTWELYEKGALLDLVDEQLHEFPQEEVIRYIKVALFCTQATASQRPLMSQVFEMFTRNIRLNEKLLSAPGVFQDSGSLSKKSITDTSSRQMSSAPVTITQVIPR 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5801684 5805009 + Conep06aG0107000.1 Cone6ag1029 439913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1029 367 Pfam Protein tyrosine and serine/threonine kinase 51 316 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1029 367 SUPERFAMILY Protein kinase-like (PK-like) 31 337 IPR011009 -
Cone6ag1029 367 FunFam Putative LRR receptor-like serine/threonine-protein kinase 124 330 - -
Cone6ag1029 367 FunFam cold-responsive protein kinase 1 18 123 - -
Cone6ag1029 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1029 367 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524(InterPro)
Cone6ag1029 367 Gene3D Phosphorylase Kinase; domain 1 8 123 - -
Cone6ag1029 367 Gene3D Transferase(Phosphotransferase) domain 1 124 329 - -
Cone6ag1029 367 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 19 354 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone6ag1029 367 SMART serkin_6 48 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1029 367 CDD STKc_IRAK 54 320 - -
Cone6ag1029 367 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1396 Cone-Chr13:10114667 Cone6ag1029 Cone-Chr6:5801684 2.79E-135 dispersed
Cone19ag1385 Cone-Chr19:9145092 Cone6ag1029 Cone-Chr6:5801684 2.38E-142 dispersed
Cone6ag0186 Cone-Chr6:887390 Cone6ag1029 Cone-Chr6:5801684 8.45E-121 dispersed
Cone6ag1029 Cone-Chr6:5801684 Cone9ag0212 Cone-Chr9:902408 4.42E-124 dispersed
Cone6ag1029 Cone-Chr6:5801684 Cone9ag1025 Cone-Chr9:5436810 2.45E-245 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82942 PF00230 MIP 1.50E-82 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1029 - - - 0.0