Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1044 ATGAATCTCGTAACAAATACAAATTCTTTAACTATCATTCTTTTCCTAGCTTGCTTCTGTCTAATTCCTATCAAATCCATAGACACCATAACATCCTCTACACCAATCAAAGACCCTCAAGCTATACTCTCTAGTGGAAACATCTTCAAACTAGGATTTTTCACCCCGGGAAAAGATTCTACAAATCGCTATCTCGGAATTTGGCTCAATCAAATTTCAGCTCAAACTATCATATGGGTAGCTAATAGAGACAGGCCACTAAAAAATTCTTCGGGTCATTTCACATTATCTCAAGATGGAAATCTTGTGTTAACAAATGGAGAGAATGAAACTCTTTGGTCTTCAAATCTTTCAAACGCTGTTCGTAATTCAAGCGCGCGGCTTTTAGATAGCGGGAATCTCGTGTTGCAAGATTTATCAACAGGAATGACCAAATGGGAGAGTTTCAAAGACCCATCTGACGCAATTCTGCCAAATATGAAAGTCACTGCAAATCTAAGCACTAAAGAGAAGATGCAAGTTGTTTCCTGGAGGACCTCAACAGACCCATCTATGGGAAACTTTTCCGTTGCCCTAGATGCCCGCCTTCCTCCTGAAGCTGTTATTTTGAAAGGTGGTGAATTGTATTATAGAACCGGTCCATGGAATGGTCAAATCTTTTTAGGTATTCCGGGTATGGATTCGAGTTATCTTTATGGATTTACTCTTATAGTTGAAGATAGAAGTATTACTCTTTCTATGGTAAATATAAGTGATCCTCTTGAGATGACTTTGTTCTTGAGTCCACAAGGGAATCTAGAGCAGAGACATTGGGACAAAGAAGGGAAGGATTGGGTAGCTGATTGGACTGCTGTGAAAAATGATTGTGATGTATATGGAGCTTGTGGTAAATTTGGGATATGTAATTCAAGAAAATTACCAATTTGCAGTTGTTTAAAAGGGTATGAGCCAAGAAATGTAGAGGAGTGGAATAGACAGAATTGGACAAGTGGGTGTGTGAGAAGGAAATTATTGAACTGCGAGAGGGTTAGTAGCAATTTGAGTGAAAAAGGAGGGAAAGAAGATGGGTTTCTTAAGCTTAAAATGGTCAAAGTGCCTTACTCTGGGATTTATTCGGGGAATCCTTCTTTTGAAGAAGATTGTCGATTTCAGTGCTTGTTAAATTGTACTTGTAATGCATATTTATATCAATCTGGGTTTGGCTGTATGTTATGGAATGATGACTTAGTTGACATGCAACAATTTCTAAATGGAGGACCAGAACTCTACCTTCGGTTATACGCTTCTGAACTAGATAGAACTAAGAACATCACGGCTATTGTCTCGGCTTCAGTAATATCTGCTTTTCTTACCTTAGTCATATTCATATACTTCTTGTGTAAGAGAAGGGTTAAAGAAAGAGGGGAAAAGAAAAGCAAGGATGTATTGTTACAAAACAGTGGAGAACCATATCTAATATTTCCAGGTGATAACATGCGTGGGGATACCCTTTTCCAATTTGAAAAACTAGCAACCGCAACAAACAATTTTAGTTTAGATAACAAGCTGGGACAAGGAGGTTTCGGTCCCGTTTACAAGGGAAAATTTTTGGATGAACAAGAAATAGCGGTAAAAAGACTTTCCAAAGCTTCCGAACAAGGGGTGGAAGAATTTACAAATGAAGTGATAGTTATGTCCAAGCTTCACCACAGAAATGTGGTGAGACTATTTGGCTGTTGTGTTGAGACCGGAGAAAGGATGTTGATATATGAATACATGCCAAATAGAAGCTTGGATTCATTTCTCTTCGATTGGAGAAAACGGTTCAACATTATTGAGGGCATTGCTCGAGGTCTCCTTTACCTACATAGGGATTCGAGGTTAAAGATTATTCATAGAGATCTTAAAGCAAGTAACATTCTTTTGGATGAAGACTTGAATCCAAAAATTTCGGATTTTGGTATGGCTAGGATCTTTGGTGGCAGTCAAGATCAAGGCAATACTAAAAGGATCATGGGGACATACGGTTATATGGCACCTGAATATGCTATGGCTGGGAGATTTTCCGAGAAATCAGATGTCTTCAGCTATGGAGTTTTGTTGCTCGAAATTGTTTGTGGAAGGAAAAACACAAGTTTCTACCATGACGCACATGTTTTAAGCCTTTTAGAATATGCATGGAAATTGTGGAATGAAGACAACATTACAGCTTTGGCAGACAGAACAATATTTGATTACCGCTACGAAAGGGAGATAGTAAGGTGCGTCCAATTAGGATTATTATGTGTACAAGAATCGGCAGTAGATAGGCCAAATGTGTCAACTATCATTTCCATTCTTAGAAGTGAAATTGTGGAGCTTTCGGCTCCGAACAAGCCTGCATTCACAGAATGGCAGACTTCTGAAGATTCGGAATTCCCAGAAACTTTCAATGGAAGATGTTCTACTAATAAGGCTACAATAACTACCGTCAAAGGCAGATAA 2463 38.61 MNLVTNTNSLTIILFLACFCLIPIKSIDTITSSTPIKDPQAILSSGNIFKLGFFTPGKDSTNRYLGIWLNQISAQTIIWVANRDRPLKNSSGHFTLSQDGNLVLTNGENETLWSSNLSNAVRNSSARLLDSGNLVLQDLSTGMTKWESFKDPSDAILPNMKVTANLSTKEKMQVVSWRTSTDPSMGNFSVALDARLPPEAVILKGGELYYRTGPWNGQIFLGIPGMDSSYLYGFTLIVEDRSITLSMVNISDPLEMTLFLSPQGNLEQRHWDKEGKDWVADWTAVKNDCDVYGACGKFGICNSRKLPICSCLKGYEPRNVEEWNRQNWTSGCVRRKLLNCERVSSNLSEKGGKEDGFLKLKMVKVPYSGIYSGNPSFEEDCRFQCLLNCTCNAYLYQSGFGCMLWNDDLVDMQQFLNGGPELYLRLYASELDRTKNITAIVSASVISAFLTLVIFIYFLCKRRVKERGEKKSKDVLLQNSGEPYLIFPGDNMRGDTLFQFEKLATATNNFSLDNKLGQGGFGPVYKGKFLDEQEIAVKRLSKASEQGVEEFTNEVIVMSKLHHRNVVRLFGCCVETGERMLIYEYMPNRSLDSFLFDWRKRFNIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEDLNPKISDFGMARIFGGSQDQGNTKRIMGTYGYMAPEYAMAGRFSEKSDVFSYGVLLLEIVCGRKNTSFYHDAHVLSLLEYAWKLWNEDNITALADRTIFDYRYEREIVRCVQLGLLCVQESAVDRPNVSTIISILRSEIVELSAPNKPAFTEWQTSEDSEFPETFNGRCSTNKATITTVKGR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6007871 6011485 + Conep06aG0108500.1 Cone6ag1044 439928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1044 820 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 785 - -
Cone6ag1044 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1044 820 Pfam Protein tyrosine and serine/threonine kinase 511 722 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1044 820 SMART blect_4 33 152 IPR001480 -
Cone6ag1044 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 781 - -
Cone6ag1044 820 Pfam D-mannose binding lectin 76 178 IPR001480 -
Cone6ag1044 820 Pfam PAN-like domain 353 412 IPR003609 -
Cone6ag1044 820 Gene3D Phosphorylase Kinase; domain 1 490 585 - -
Cone6ag1044 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 149 - -
Cone6ag1044 820 SUPERFAMILY Protein kinase-like (PK-like) 495 773 IPR011009 -
Cone6ag1044 820 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Cone6ag1044 820 CDD PAN_AP_plant 338 426 - -
Cone6ag1044 820 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544(InterPro)
Cone6ag1044 820 FunFam Leucine-rich repeat receptor-like protein kinase 490 585 - -
Cone6ag1044 820 CDD B_lectin 35 152 IPR001480 -
Cone6ag1044 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 216 IPR036426 -
Cone6ag1044 820 ProSiteProfiles PAN/Apple domain profile. 340 428 IPR003609 -
Cone6ag1044 820 SMART serkin_6 510 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1044 820 ProSiteProfiles Protein kinase domain profile. 510 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1044 820 Gene3D - 24 149 IPR036426 -
Cone6ag1044 820 Gene3D Transferase(Phosphotransferase) domain 1 586 785 - -
Cone6ag1044 820 SMART ntp_6 352 426 IPR003609 -
Cone6ag1044 820 PIRSF SRK 1 820 IPR024171 GO:0004674(InterPro)
Cone6ag1044 820 CDD STKc_IRAK 516 773 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1044 Cone-Chr6:6007871 Cone9ag1036 Cone-Chr9:5546112 0 dispersed
Cone6ag1043 Cone-Chr6:5995292 Cone6ag1044 Cone-Chr6:6007871 2.27E-54 tandem
Cone1ag0106 Cone-Chr1:588706 Cone6ag1044 Cone-Chr6:6007871 9.93E-32 wgd
Cone12ag1420 Cone-Chr12:10348569 Cone6ag1044 Cone-Chr6:6007871 9.22E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82944 PF07526 POX 1.40E-39 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1044 - - - 0.0