Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1064 ATGAGTTATATTAATCGGCCATTATTAATACATATGTGGGTTTTGATTGGTTTGATGTTGATTTCTTACAAGATGCCATTTTCCTCTGCGGACACTGATCTTCGTGATGTTGCGGCAGTGAATGCCTTATTTGTAGCTCTAGGCTATCCTCCTCTTACTGGTTGGATCCTGGTTGGAGGCGATCCCTGTGGAGAAAAGTGGCAAGGAGTTGAGTGTGTTTTCACAAATATAACAGCAATAAGACTAAGCGGAACAAATTCTGGGGGGCAACTTGGTGATACTTTTGGATCATTTGAATCGATAATGGAAATAGATCTTAGCAATAACCATATTGGAGGGAGTTTTCCAATCGTATTGCCCGCTACCCTAAGAAACTTGTCGTTGAACAATAACCTTCTAACTGGTGGAATACCAGATGCATTTCAGCTGCTTAGTGGTCTGACAAACCTGGACATTTCGGGAAACAATTTGACTAGTCAGCTCCCTCCCTCAATGGGAAGTTTGTCATCACTTTCTACATTACACTTGCAGAACAATCAACTTTCAGGAACCCTTGATGTGTTGCAGGCTCTTCCAATTACCGATCTGAACATAGAGAACAATCTATTTTCCGGGCCTATACCTCCAAAGTTATTGACTATTCCAAATTTCAGAAAAGATGGAAATCCATTTAATACTACTATAATTCCAACTCCCACAGCACCATCTCCTTCACCTCTTGCTGGGACAACTGGCCCCTTCACTTCAGCAAAACCACCTGCATCGATATGGGCAATAGGACCATCTGGCTCTGAAACTCTGAAATCGAATGGATCTAATAATTTTTTTACAGCAAGTAAGATCACTTGGATTGCTATTATAGGGGTGGTGATAGTAATTGCACTAGTACTCTGTCTTTGTGCGTCAAGATACTTGATTGGGAGAAAAGAAAGGAAAAATGCTAAGAGATACGAAAATGGTGTGTTTAATAGCTCTACAGAGAAGTCTAACTATAGTGAAGTAGACCCACCTCAGGGAACGAATGACATAGAAAAAGGAGAACCAAAGGAGACTATCCTGAAACCAGTAGACAAATTGGGAATGCATAATGGAAGAACAAATTTCACTCCAAAATTGCAAGACAAGCAAGAGAGAGATGAGAGAGTAATAGCATCAGCTAGTTCGCCGCATAGGAAAGATCATGAGATAATGGATACTTCAAGCACGGATGATAATTTCTTGCCGCCACCACCTCCTCTTCCTCCCTTTCTAGTTGAAAAGCCTGTAAATTTGAAATTGACTGCCCCAACACCCACTAGTAGACGCCCTACCAAAATTGTAAACTCAAGCTGTAGAGAAATTTTCTCCATTGCAACCCTTCAATTGTACACAAACAGTTTCTCTCAGGAGAATTTTATTGGAACAGGCATGCTTGGTAGCGTTTATAAAGCCGAACTTCCAAGTGGAAAGCTGTTGGCAGTGAAGAAACTGGATACCACAGCCTCGAGACAGCAAAGTGATGAGGAATTTCTAGAACTAGTATCTAACATCTCCAAAATCCACCATACTAACGTAGTGGAGCTTGTTGGTTACTGTTTTGAGCATGGTCAACGCCTTCTTGTTTATGAGTACTGTGAAAATGGGACACTTTTTGATGCACTACACATGGATGAAGGGATTCATAGGAAACTTTCATGGAATACGCGCATAAGGGCTGCCCTCGGAGTTGCAAGAGCCCTAGAGTATTTGCATGAGGTCTGTAATCCACCTGTTATGCACCGGAACCTTAAATCTGGTAATCTTCTCCTTGATGATGAGCTTAAAGTACGTGTATCGGACTGTGGTTTAGCTCCTCTACTATCATATGGCTCTGCAAATCAGTTGTCTGGTTATAGAGCCCCAGAATTCGAGTTAGGAAGTTATACTTATCAAAGTGATGTATATAGCTTTGGAGTTGTAATGCTTGAGCTCCTCACTGGACGGAAAGCATGTGACAGGTCACGGCCTAGGGGAGAACAATTTCTGGTCAGGTGGGCCATCCCTCAGCTCCATGATATCGATGCATTATCAAAGATGGTTGATCCGTCTCTACATGGCGCCTATCCAGTCAAGTCATTATCTCGTTTTGCTGATATAATCTCCTCATGTGTACAGAGCGAGCCAGAATTTAGGCCGCAAATGTCGGAAATTGTCCAAGAATTGTTACAGATGCTCTAA 2196 41.94 MSYINRPLLIHMWVLIGLMLISYKMPFSSADTDLRDVAAVNALFVALGYPPLTGWILVGGDPCGEKWQGVECVFTNITAIRLSGTNSGGQLGDTFGSFESIMEIDLSNNHIGGSFPIVLPATLRNLSLNNNLLTGGIPDAFQLLSGLTNLDISGNNLTSQLPPSMGSLSSLSTLHLQNNQLSGTLDVLQALPITDLNIENNLFSGPIPPKLLTIPNFRKDGNPFNTTIIPTPTAPSPSPLAGTTGPFTSAKPPASIWAIGPSGSETLKSNGSNNFFTASKITWIAIIGVVIVIALVLCLCASRYLIGRKERKNAKRYENGVFNSSTEKSNYSEVDPPQGTNDIEKGEPKETILKPVDKLGMHNGRTNFTPKLQDKQERDERVIASASSPHRKDHEIMDTSSTDDNFLPPPPPLPPFLVEKPVNLKLTAPTPTSRRPTKIVNSSCREIFSIATLQLYTNSFSQENFIGTGMLGSVYKAELPSGKLLAVKKLDTTASRQQSDEEFLELVSNISKIHHTNVVELVGYCFEHGQRLLVYEYCENGTLFDALHMDEGIHRKLSWNTRIRAALGVARALEYLHEVCNPPVMHRNLKSGNLLLDDELKVRVSDCGLAPLLSYGSANQLSGYRAPEFELGSYTYQSDVYSFGVVMLELLTGRKACDRSRPRGEQFLVRWAIPQLHDIDALSKMVDPSLHGAYPVKSLSRFADIISSCVQSEPEFRPQMSEIVQELLQML 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6225237 6236334 - Conep06aG0110700.1 Cone6ag1064 439948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1064 731 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 538 731 - -
Cone6ag1064 731 Gene3D Transferase(Phosphotransferase) domain 1 538 731 - -
Cone6ag1064 731 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515(InterPro)
Cone6ag1064 731 MobiDBLite consensus disorder prediction 340 356 - -
Cone6ag1064 731 SUPERFAMILY Protein kinase-like (PK-like) 436 727 IPR011009 -
Cone6ag1064 731 Gene3D Phosphorylase Kinase; domain 1 427 537 - -
Cone6ag1064 731 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 35 727 IPR046959 -
Cone6ag1064 731 Gene3D Ribonuclease Inhibitor 46 236 IPR032675 -
Cone6ag1064 731 MobiDBLite consensus disorder prediction 325 406 - -
Cone6ag1064 731 ProSiteProfiles Protein kinase domain profile. 460 731 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1064 731 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 427 537 - -
Cone6ag1064 731 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 121 236 - -
Cone6ag1064 731 SUPERFAMILY L domain-like 36 216 - -
Cone6ag1064 731 MobiDBLite consensus disorder prediction 371 400 - -
Cone6ag1064 731 Pfam Protein tyrosine and serine/threonine kinase 463 727 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1064 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1064 Cone-Chr6:6225237 Cone8ag1487 Cone-Chr8:11333661 3.08E-181 dispersed
Cone12ag1436 Cone-Chr12:10403858 Cone6ag1064 Cone-Chr6:6225237 3.80E-185 wgd
Cone15ag1154 Cone-Chr15:9341508 Cone6ag1064 Cone-Chr6:6225237 5.22E-68 wgd
Cone6ag1064 Cone-Chr6:6225237 Cone9ag1056 Cone-Chr9:5752906 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone17ag0031 . 384 668 Strubbelig Receptor Gene Family AT1G11130 53.0 1.5e-81 301.6
Cone4ag0853 . 404 690 Strubbelig Receptor Gene Family AT1G11130 51.6 8.0e-80 295.8
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone4ag0853 . 3 719 Strubbelig Receptor Gene Family AT1G53730 64.8 2.1e-208 723.0
Cone7ag0827 . 1 691 Strubbelig Receptor Gene Family AT1G53730 61.2 4.7e-208 721.8
Cone17ag0031 . 5 668 Strubbelig Receptor Gene Family AT1G53730 57.4 7.2e-164 575.1
Cone1ag0021 . 1 659 Strubbelig Receptor Gene Family AT1G53730 52.5 1.4e-156 550.8
Cone4ag0869 . 11 699 Strubbelig Receptor Gene Family AT1G53730 51.0 8.8e-154 541.6
Cone7ag0827 . 10 679 Strubbelig Receptor Gene Family AT3G14350 59.6 4.6e-184 642.1
Cone4ag0853 . 13 707 Strubbelig Receptor Gene Family AT3G14350 60.2 6.6e-183 638.3
Cone20ag1372 . 25 168 Strubbelig Receptor Gene Family AT3G14350 69.4 8.4e-45 179.5
Cone1ag0021 . 103 674 Strubbelig Receptor Gene Family AT4G22130 63.5 8.0e-187 651.0
Cone5ag1846 . 150 746 Strubbelig Receptor Gene Family AT4G22130 60.4 1.6e-179 626.7
Cone7ag0827 . 367 682 Strubbelig Receptor Gene Family AT4G22130 65.3 5.1e-117 419.1
Cone4ag0853 . 395 710 Strubbelig Receptor Gene Family AT4G22130 65.3 1.9e-116 417.2
Cone17ag0031 . 329 668 Strubbelig Receptor Gene Family AT4G22130 59.2 7.9e-110 395.2
Cone8ag1487 . 482 783 Strubbelig Receptor Gene Family AT4G22130 61.7 2.4e-106 383.6
Cone12ag1436 . 468 769 Strubbelig Receptor Gene Family AT4G22130 61.1 1.3e-104 377.9
Cone4ag0869 . 367 700 Strubbelig Receptor Gene Family AT4G22130 53.5 6.7e-101 365.5
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT4G22130 61.0 5.3e-98 355.9
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT4G22130 59.6 1.9e-95 347.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82945 PF00149 Metallophos 6.00E-40 CL0163 Cone PK