Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1064 ATGAGTTATATTAATCGGCCATTATTAATACATATGTGGGTTTTGATTGGTTTGATGTTGATTTCTTACAAGATGCCATTTTCCTCTGCGGACACTGATCTTCGTGATGTTGCGGCAGTGAATGCCTTATTTGTAGCTCTAGGCTATCCTCCTCTTACTGGTTGGATCCTGGTTGGAGGCGATCCCTGTGGAGAAAAGTGGCAAGGAGTTGAGTGTGTTTTCACAAATATAACAGCAATAAGACTAAGCGGAACAAATTCTGGGGGGCAACTTGGTGATACTTTTGGATCATTTGAATCGATAATGGAAATAGATCTTAGCAATAACCATATTGGAGGGAGTTTTCCAATCGTATTGCCCGCTACCCTAAGAAACTTGTCGTTGAACAATAACCTTCTAACTGGTGGAATACCAGATGCATTTCAGCTGCTTAGTGGTCTGACAAACCTGGACATTTCGGGAAACAATTTGACTAGTCAGCTCCCTCCCTCAATGGGAAGTTTGTCATCACTTTCTACATTACACTTGCAGAACAATCAACTTTCAGGAACCCTTGATGTGTTGCAGGCTCTTCCAATTACCGATCTGAACATAGAGAACAATCTATTTTCCGGGCCTATACCTCCAAAGTTATTGACTATTCCAAATTTCAGAAAAGATGGAAATCCATTTAATACTACTATAATTCCAACTCCCACAGCACCATCTCCTTCACCTCTTGCTGGGACAACTGGCCCCTTCACTTCAGCAAAACCACCTGCATCGATATGGGCAATAGGACCATCTGGCTCTGAAACTCTGAAATCGAATGGATCTAATAATTTTTTTACAGCAAGTAAGATCACTTGGATTGCTATTATAGGGGTGGTGATAGTAATTGCACTAGTACTCTGTCTTTGTGCGTCAAGATACTTGATTGGGAGAAAAGAAAGGAAAAATGCTAAGAGATACGAAAATGGTGTGTTTAATAGCTCTACAGAGAAGTCTAACTATAGTGAAGTAGACCCACCTCAGGGAACGAATGACATAGAAAAAGGAGAACCAAAGGAGACTATCCTGAAACCAGTAGACAAATTGGGAATGCATAATGGAAGAACAAATTTCACTCCAAAATTGCAAGACAAGCAAGAGAGAGATGAGAGAGTAATAGCATCAGCTAGTTCGCCGCATAGGAAAGATCATGAGATAATGGATACTTCAAGCACGGATGATAATTTCTTGCCGCCACCACCTCCTCTTCCTCCCTTTCTAGTTGAAAAGCCTGTAAATTTGAAATTGACTGCCCCAACACCCACTAGTAGACGCCCTACCAAAATTGTAAACTCAAGCTGTAGAGAAATTTTCTCCATTGCAACCCTTCAATTGTACACAAACAGTTTCTCTCAGGAGAATTTTATTGGAACAGGCATGCTTGGTAGCGTTTATAAAGCCGAACTTCCAAGTGGAAAGCTGTTGGCAGTGAAGAAACTGGATACCACAGCCTCGAGACAGCAAAGTGATGAGGAATTTCTAGAACTAGTATCTAACATCTCCAAAATCCACCATACTAACGTAGTGGAGCTTGTTGGTTACTGTTTTGAGCATGGTCAACGCCTTCTTGTTTATGAGTACTGTGAAAATGGGACACTTTTTGATGCACTACACATGGATGAAGGGATTCATAGGAAACTTTCATGGAATACGCGCATAAGGGCTGCCCTCGGAGTTGCAAGAGCCCTAGAGTATTTGCATGAGGTCTGTAATCCACCTGTTATGCACCGGAACCTTAAATCTGGTAATCTTCTCCTTGATGATGAGCTTAAAGTACGTGTATCGGACTGTGGTTTAGCTCCTCTACTATCATATGGCTCTGCAAATCAGTTGTCTGGTTATAGAGCCCCAGAATTCGAGTTAGGAAGTTATACTTATCAAAGTGATGTATATAGCTTTGGAGTTGTAATGCTTGAGCTCCTCACTGGACGGAAAGCATGTGACAGGTCACGGCCTAGGGGAGAACAATTTCTGGTCAGGTGGGCCATCCCTCAGCTCCATGATATCGATGCATTATCAAAGATGGTTGATCCGTCTCTACATGGCGCCTATCCAGTCAAGTCATTATCTCGTTTTGCTGATATAATCTCCTCATGTGTACAGAGCGAGCCAGAATTTAGGCCGCAAATGTCGGAAATTGTCCAAGAATTGTTACAGATGCTCTAA 2196 41.94 MSYINRPLLIHMWVLIGLMLISYKMPFSSADTDLRDVAAVNALFVALGYPPLTGWILVGGDPCGEKWQGVECVFTNITAIRLSGTNSGGQLGDTFGSFESIMEIDLSNNHIGGSFPIVLPATLRNLSLNNNLLTGGIPDAFQLLSGLTNLDISGNNLTSQLPPSMGSLSSLSTLHLQNNQLSGTLDVLQALPITDLNIENNLFSGPIPPKLLTIPNFRKDGNPFNTTIIPTPTAPSPSPLAGTTGPFTSAKPPASIWAIGPSGSETLKSNGSNNFFTASKITWIAIIGVVIVIALVLCLCASRYLIGRKERKNAKRYENGVFNSSTEKSNYSEVDPPQGTNDIEKGEPKETILKPVDKLGMHNGRTNFTPKLQDKQERDERVIASASSPHRKDHEIMDTSSTDDNFLPPPPPLPPFLVEKPVNLKLTAPTPTSRRPTKIVNSSCREIFSIATLQLYTNSFSQENFIGTGMLGSVYKAELPSGKLLAVKKLDTTASRQQSDEEFLELVSNISKIHHTNVVELVGYCFEHGQRLLVYEYCENGTLFDALHMDEGIHRKLSWNTRIRAALGVARALEYLHEVCNPPVMHRNLKSGNLLLDDELKVRVSDCGLAPLLSYGSANQLSGYRAPEFELGSYTYQSDVYSFGVVMLELLTGRKACDRSRPRGEQFLVRWAIPQLHDIDALSKMVDPSLHGAYPVKSLSRFADIISSCVQSEPEFRPQMSEIVQELLQML 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6225237 6236334 - Conep06aG0110700.1 Cone6ag1064 439948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1064 731 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 538 731 - -
Cone6ag1064 731 Gene3D Transferase(Phosphotransferase) domain 1 538 731 - -
Cone6ag1064 731 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515(InterPro)
Cone6ag1064 731 MobiDBLite consensus disorder prediction 340 356 - -
Cone6ag1064 731 SUPERFAMILY Protein kinase-like (PK-like) 436 727 IPR011009 -
Cone6ag1064 731 Gene3D Phosphorylase Kinase; domain 1 427 537 - -
Cone6ag1064 731 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 35 727 IPR046959 -
Cone6ag1064 731 Gene3D Ribonuclease Inhibitor 46 236 IPR032675 -
Cone6ag1064 731 MobiDBLite consensus disorder prediction 325 406 - -
Cone6ag1064 731 ProSiteProfiles Protein kinase domain profile. 460 731 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1064 731 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 427 537 - -
Cone6ag1064 731 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 121 236 - -
Cone6ag1064 731 SUPERFAMILY L domain-like 36 216 - -
Cone6ag1064 731 MobiDBLite consensus disorder prediction 371 400 - -
Cone6ag1064 731 Pfam Protein tyrosine and serine/threonine kinase 463 727 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1064 Cone-Chr6:6225237 Cone8ag1487 Cone-Chr8:11333661 3.08E-181 dispersed
Cone12ag1436 Cone-Chr12:10403858 Cone6ag1064 Cone-Chr6:6225237 3.80E-185 wgd
Cone15ag1154 Cone-Chr15:9341508 Cone6ag1064 Cone-Chr6:6225237 5.22E-68 wgd
Cone6ag1064 Cone-Chr6:6225237 Cone9ag1056 Cone-Chr9:5752906 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82945 PF00149 Metallophos 6.00E-40 CL0163 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1064 - - - 0.0