Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1065 ATGAGAGCTAATAACATTCTCCTACCACTCTCATCTTTCTTCTTCTTCTTCTTCCTCTTCCCCACCTTAACAACCTCCATAAACACCTTAACTTCATCTCAATCCCTCACAAAAGACCAGACCCTTCTCTCTCCTTCTTCAATCTTCGAGCTCGGCTTCTTCAACCCATCAGATTCAAAATGGTACTTAGGAATCTGGTACCAGAATATTCCCGATAAAACGGTCGTATGGGTCGCAAACAGAGACAGCCCTCTTTCCAACTCCTCCGCTTTGCTCCAGATCGGACCAGACGGTAAAAACATAGTCCTTCTCGACCAATCAGGCGCCCTCAAGTGGTCGTCAAACAACACCAAGTCCGTTGCTAATCCTTCCATACAGCTTCTAGACTCAGGAAATCTCGTTCTTACGGATTTAAACGAAAACTCAGAAGATTATCTATGGCAGAGCTTTGATCTTCCGACTGATACTCTGCTTCCAGATATGAAGCTTGGATGGGATTTAAACAGTGGAACCGATCGAGTCATACAGTCCTGGAAAAACCGAGACGACCCTTCGTCAGGAGATTTTTCCTTCAACCTAGATTTCCACGGATTTCCAGAAATTTTCCTTCTATCCAAACAGAATAGAGTATACAGAAGTGGGCCATGGAACGGGATTAGATTCAGCGGCGTACCAGAAATGGCGCCTTTGGATGGATTAAGCTTCACCTTCGTCACAAACCAGGACGAGGTATACTACTCCTTCTCGATCTCAAAAAAATCGTTGATTTCACGATTGGTAGTGAATTCATCAGGCGCTCTTGAAAGGTACACGTGGATTCCGACGAGCCGGACGTGGAATAAATTCTGGTACGCGCCGAAAGATCAGTGCGATAACTACATAGAGTGCGGTCCGTATGGGATCTGCGACACAAACTTTTACCCCGTCTGCAAGTGTGTGCAAGGGTTTCAGCCGAAGAATGTTCAGGCGTGGAATCTAAGAGATGGGTCAGGTGGGTGTGTGAGAAAAACTGAGTTGGACTGTAGTGACGATGGGTTTGTGGAGATGGATAATATGAAGGTGCCGGAAAGCGGTGGAGCGGTTGTTGTTGATAAGAGCATGAGTGTTGGTGAGTGTAGAGAGGTTTGTTTGAGGAATTGTTCCTGTACAGCGTTTTCTGATTGGAATATTAGCAATGGCGGTTCTGGTTGTGTTTTGTGGTTTGGCGAGTTGCTTGATATCAGGGTTTACGAACAGGGTGGGCAGAGACTCTTCATTAGATTAGCTGCTTCTGATCTTGGGGGTGTGAGTTCGAAAAACTCGAAAAGAGTACTTGTGATCATAGTGATCACAGTCTGCATTGCAATCCTGCTATCAATAACTACTATCTGTATACTATGGAAGAGGAAGACACTACAGGCTCTAAGAAATGGAAACAAGGATCAGAATGGTCCTCGTGAAAGAAGCCAGGATTTACTAATAAACCCAGCAGTTATTTCAAGCAAGAGAGATTTCTCAGGCGAGAAGTGTAGTGAGGACGAGCTCGAACTACCTTTGTTCGATTTTGCAGCCATAGTGTTAGCTACAGAAAACTTCTCCGAAGAGAATAGACTAGGACAAGGCGGTTTTGGTATTGTTTATAAGGGTAGGTTGCCTGAAGGCCGAGATATCGCCGTGAAGAGGCTTTCTAAGAATTCTGGTCAAGGAATTGAAGAGTTTAAGAATGAGGTGAAGTTAATTGCAAGGCTTCAACATAGAAATCTTGTTCGCTTATTAGGTTGCTGCATTGAGATGGAAGAAAAGATGCTCATTTATGAGTACATGGAAAATAGAAGCCTCGATTCTGTTCTATTCAGTAAGACGAGAAAAACCTTGTTGGACTGGCCGTGCCGGTTTAACATAATTTGCGGTATTGCTAGAGGGCTTCTTTATCTTCACCAAGATTCCCGGTTTAGAATCATCCATAGGGATCTCAAGGCAAGTAACATTCTACTTGATAGAGATATGGACCCGAAAATATCAGATTTTGGTATGGCCAGAATTTTCGGGACCGATCAGACAGAAGCAAATACAGTAAAAGTGGTGGGAACATATGGCTATATGTCTCCTGAATATGCAATGGATGGGGTTTTTTCGGTAAAATCCGACGTTTTCAGTTTCGGCGTACTGGTGCAAGAGATCATTAGCGGTAACAAGAATAGAGGATTTTACAATGCAAACAATGAACTTAACCTTCTTGGATACGCATGGAATCTATGGAGAGAAGAAAAGGGATTGGAGCTAGTGGATTCGAGCATGGCTGATTCATGGTCACCATCTGAAGTGCTTAGATGTATACAAGTCAGCCTCTTATGTGTACAAGAACGAGCAGAGGATCGACCAACCATGTCTTCCGTTGTATTGATGTTGAGTAGTGAAACGGCTATAATGCCTCAACCGAAAAACCCGGGATTTTGCCTTGGAAGGAGTGTTGGTGAAACTGATTCATCTTCTAGTAAGCAAGAAGAAACATTCACTGTAAATCAAGTTACTGTCACAGTACTAGATGCTAGGTAG 2535 43.59 MRANNILLPLSSFFFFFFLFPTLTTSINTLTSSQSLTKDQTLLSPSSIFELGFFNPSDSKWYLGIWYQNIPDKTVVWVANRDSPLSNSSALLQIGPDGKNIVLLDQSGALKWSSNNTKSVANPSIQLLDSGNLVLTDLNENSEDYLWQSFDLPTDTLLPDMKLGWDLNSGTDRVIQSWKNRDDPSSGDFSFNLDFHGFPEIFLLSKQNRVYRSGPWNGIRFSGVPEMAPLDGLSFTFVTNQDEVYYSFSISKKSLISRLVVNSSGALERYTWIPTSRTWNKFWYAPKDQCDNYIECGPYGICDTNFYPVCKCVQGFQPKNVQAWNLRDGSGGCVRKTELDCSDDGFVEMDNMKVPESGGAVVVDKSMSVGECREVCLRNCSCTAFSDWNISNGGSGCVLWFGELLDIRVYEQGGQRLFIRLAASDLGGVSSKNSKRVLVIIVITVCIAILLSITTICILWKRKTLQALRNGNKDQNGPRERSQDLLINPAVISSKRDFSGEKCSEDELELPLFDFAAIVLATENFSEENRLGQGGFGIVYKGRLPEGRDIAVKRLSKNSGQGIEEFKNEVKLIARLQHRNLVRLLGCCIEMEEKMLIYEYMENRSLDSVLFSKTRKTLLDWPCRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDRDMDPKISDFGMARIFGTDQTEANTVKVVGTYGYMSPEYAMDGVFSVKSDVFSFGVLVQEIISGNKNRGFYNANNELNLLGYAWNLWREEKGLELVDSSMADSWSPSEVLRCIQVSLLCVQERAEDRPTMSSVVLMLSSETAIMPQPKNPGFCLGRSVGETDSSSSKQEETFTVNQVTVTVLDAR 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6254890 6259434 + Conep06aG0110800.1 Cone6ag1065 439949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1065 844 Pfam Domain of unknown function (DUF3403) 798 844 IPR021820 GO:0004674(InterPro)
Cone6ag1065 844 ProSiteProfiles Protein kinase domain profile. 525 802 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1065 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 150 - -
Cone6ag1065 844 CDD PAN_AP_plant 337 422 - -
Cone6ag1065 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 804 - -
Cone6ag1065 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 217 IPR036426 -
Cone6ag1065 844 SUPERFAMILY Protein kinase-like (PK-like) 508 796 IPR011009 -
Cone6ag1065 844 CDD B_lectin 33 153 IPR001480 -
Cone6ag1065 844 Pfam Receptor serine/threonine kinase 479 515 IPR022126 GO:0004674(InterPro)
Cone6ag1065 844 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544(InterPro)
Cone6ag1065 844 Pfam PAN-like domain 341 407 IPR003609 -
Cone6ag1065 844 Pfam Protein tyrosine and serine/threonine kinase 528 793 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1065 844 SMART ntp_6 341 421 IPR003609 -
Cone6ag1065 844 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 811 - -
Cone6ag1065 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 491 600 - -
Cone6ag1065 844 Gene3D - 23 150 IPR036426 -
Cone6ag1065 844 Pfam D-mannose binding lectin 74 179 IPR001480 -
Cone6ag1065 844 SMART serkin_6 525 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1065 844 Gene3D Transferase(Phosphotransferase) domain 1 601 805 - -
Cone6ag1065 844 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524(InterPro)
Cone6ag1065 844 Gene3D Phosphorylase Kinase; domain 1 500 600 - -
Cone6ag1065 844 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Cone6ag1065 844 PIRSF SRK 1 844 IPR024171 GO:0004674(InterPro)
Cone6ag1065 844 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Cone6ag1065 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1065 844 CDD STKc_IRAK 531 796 - -
Cone6ag1065 844 SMART blect_4 33 153 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1065 Cone-Chr6:6254890 Cone9ag0123 Cone-Chr9:537676 1.45E-270 dispersed
Cone9ag1064 Cone-Chr9:5936205 Cone6ag1065 Cone-Chr6:6254890 1.83E-97 dispersed
Cone6ag1065 Cone-Chr6:6254890 Cone6ag1066 Cone-Chr6:6260212 3.52E-37 tandem
Cone1ag0103 Cone-Chr1:541600 Cone6ag1065 Cone-Chr6:6254890 1.40E-109 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone6ag1065 Cone-Chr6:6254890 2.91E-139 wgd
Cone14ag1104 Cone-Chr14:9211550 Cone6ag1065 Cone-Chr6:6254890 1.87E-193 wgd
Cone15ag1114 Cone-Chr15:9112166 Cone6ag1065 Cone-Chr6:6254890 3.62E-217 wgd
Cone5ag1635 Cone-Chr5:11545512 Cone6ag1065 Cone-Chr6:6254890 6.28E-24 wgd
Cone6ag0103 Cone-Chr6:501150 Cone6ag1065 Cone-Chr6:6254890 1.31E-260 wgd
Cone6ag1065 Cone-Chr6:6254890 Cone9ag1057 Cone-Chr9:5762145 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82946 PF04525 LOR 2.00E-48 CL0395 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1065 - - - 0.0